BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52020.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898105 jgi|Araly1|898105|Al_scaffold_0005_2071 1834 0.0
Ahg898595 jgi|Araly1|898595|Al_scaffold_0005_2561 1607 0.0
> Ahg898105 jgi|Araly1|898105|Al_scaffold_0005_2071
Length=1494
Score = 1834 bits (993), Expect = 0.0
Identities = 1351/1520 (89%), Gaps = 40/1520 (3%)
Strand=Plus/Plus
Query 1 ATGGGAGAACTACAAGACTGGTCGGTAACCACTTGTCTCCTCCTTTTATTGTTTCAAGCG 60
|||||| |||||||||| ||||| ||||||||||||||| ||||||| || ||||||||
Sbjct 1 ATGGGAAAACTACAAGATTGGTCTGTAACCACTTGTCTCTTCCTTTTCTTATTTCAAGCA 60
Query 61 TCACAAATCCATTGCACGAGCCAAACACATGTTTTAAACCGTCTTTTGTACCGCTCGAAG 120
| |||||||| |||||| ||||||||||||||| ||| ||||| || |||||||||||
Sbjct 61 TTACAAATCCGTTGCACAAGCCAAACACATGTTCTAAGCCGTC---TGAACCGCTCGAAG 117
Query 121 CGAGGGTTTGGTTCGTCGGTTGACACGAACCATTTAAATGCCATCCGTCACTTAAGCGTG 180
|||||| ||||||||||||||||||| ||||| ||||||| || |||| ||||||||||
Sbjct 118 CGAGGGATTGGTTCGTCGGTTGACACAAACCACTTAAATGTGATTCGTCGCTTAAGCGTG 177
Query 181 TCTTCACCCCAAAACACCAGCGGTGTTAACCAACAAGAGCAAAAGGAGAGAGATCTAATT 240
||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 TCTTCGCCCCTAAACACAAGCGGTGTTAACCAACAAGAGCAAAGGGAGAGAGATCTAATC 237
Query 241 GAGAATCTGCCCGGACAGCCTTCAGTTAGTTTTAGACAATATGGCGGTTATGTGACCGTG 300
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGAATCTGCCTGGACAACCTTCAGTTAGTTTTAGACAATATGGCGGTTATGTGACCGTG 297
Query 301 AATGAGTCAGCAGGTCGATCCTTGTACTATTATTTCGTGGAAGCCACC-AAAACCAAAAA 359
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 298 AATGAGTCAGCAGGTCGATCCTTGTACTATTATTTCGTGGAAGCCACCGAAAAC-AAAAA 356
Query 360 GTCTTTACCCCTTGTTCTATGGCTAAACGGAGGACCTGGTTGTTCCTCCCTATATGGGGC 419
||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 357 GTCGTCACCCCTTGTTCTATGGCTAAACGGAGGACCTGGCTGCTCCTCCCTATATGGGGC 416
Query 420 ATTTCAAGAGCTTGGTCCATTCCGCATATATGGCGACGGCAAAACACTCTATACCAATCC 479
||||||||| ||||| |||||||||| | || ||||||||||||||||||||||||||||
Sbjct 417 ATTTCAAGAACTTGGCCCATTCCGCACACATAGCGACGGCAAAACACTCTATACCAATCC 476
Query 480 TTATTCATGGAACAACGTGGCGAACATATTATTCTTAGAATCTCCAGTAGGAACGGGATT 539
||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 477 TTATTCATGGAACAAATTGGCGAACATATTATTTTTAGAATCTCCAGCAGGAACGGGATT 536
Query 540 CTCGTACACGAACACAGA-GTCGGATTTGGAGAATCCCGGGGACATGAA-AGCAGCAGCT 597
|||||| ||||||||| | | |||||||||||||||||||||||||||| | ||||||||
Sbjct 537 CTCGTATACGAACACA-ACGACGGATTTGGAGAATCCCGGGGACATGAATA-CAGCAGCT 594
Query 598 GATAAATACATCTTCTTGGTGAAATGGCTGGAGAGGTTTCCGGAATATAAAGGAAGAGAA 657
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 595 GATAACTACATCTTCTTGGTGAAATGGCTGGAGAGGTTTCCGGAATACAAAGGAAGAGAA 654
Query 658 TTTTACATTGCTGGTGAGAGTTACGCCGGGCACTATGTTCCACAACTCGCACAAACCATC 717
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTTTACATCGCTGGTGAGAGTTACGCCGGGCACTATGTTCCACAACTCGCACAAACCATC 714
Query 718 CTTGTTCATAACAAGAACCAAAACTTCATCAACCTACGTGGCATTTTGATTGGTAACCCG 777
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 715 CTTGTCCATAACAAGAACCAAACCTTCATCAACCTACGTGGCATTTTGATTGGTAACCCG 774
Query 778 ACTCTGAACGACATAGTCGAAAC-AACGGGTTCGTTTGA-TTATTTAGTAAGCCATGCTT 835
| |||| |||||| | |||| | || |||| | || || ||| |||||||||||||
Sbjct 775 AGTCTGGACGACACCGCCGAA-CTAATGGGTGCAAACGAGTT-TTTGGTAAGCCATGCTT 832
Query 836 TACTCTCACAAGATAG-TCTCCTTAGCTACAAGGAAAACTGCGCA-ACTGACACTCCAAA 893
||||||||||||| | | ||||||||| | || |||||||||| | | || ||||||
Sbjct 833 TACTCTCACAAGAAACAT-TCCTTAGCTTCGAGAAAAACTGCGCCCA-TAACCCTCCAAC 890
Query 894 AA-TGGAGGTGGATTGCATCGCA-TTGAGTATGAAAATCGACGACGACATaaaaaaaaTG 951
|| |||| |||||| ||| | ||||||||||||||| | ||||||||| ||||||
Sbjct 891 TGGTG-AGGTTGATTGCGTCG-AGTTGAGTATGAAAATCCAGGACGACATAGGAAAAATA 948
Query 952 AACCTATACAACATATTGACTCCTACGTGCATAAACGCCACGTTGACCCCGTTGACTAAC 1011
||||||||||||||||| |||||||||||| ||||| |||||| || | ||||
Sbjct 949 AACCTATACAACATATTAACTCCTACGTGCCTAAACCCCACGTCGA--------A-TAAC 999
Query 1012 CAATCCAAAGAATGCACCACTGTGCTGCAGTATGAACCGTGCGGAATGCAATACATAGCA 1071
||||||||||||||||| || ||| |||| ||||| ||||||||||||| |||||| |
Sbjct 1000 CAATCCAAAGAATGCACAACGGTGATGCAATATGATGCGTGCGGAATGCAGCACATAG-A 1058
Query 1072 -GCTTACTTAAACC-GGGAAGACGTTCAGCGTTCCATGCACGTCACGAAATTGCCGCACA 1129
|||||||| |||| ||| || ||||||||||| ||||||||||| ||| |||| |||
Sbjct 1059 TGCTTACTTTAACCAGGGC-GAGGTTCAGCGTTCGATGCACGTCACAAAAGTGCCATACA 1117
Query 1130 CGTGGATGCTATGTAATGAAG-CCACAGGATTCAATTGGAACCAGACGGATT-ATTCTGC 1187
|||||| |||||||||||||| || | ||||| ||||||| ||||| ||| || ||||
Sbjct 1118 CGTGGAAGCTATGTAATGAAGACCTC-GGATTTAATTGGAGTCAGACCGATGCAT-CTGC 1175
Query 1188 ATCGATGCTACCTATTCTCAAAGAGCTGATGAAACATGATCAACTTCGAGTCTGGGTGTA 1247
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1176 ATCGATGCTACCTATTCTCAAAGAGCTGATGAAACATGAGCAACTGCGAGTTTGGGTGTA 1235
Query 1248 CACTGGCGACACGGATACGGTGATTCCGTTGACAGTTACAATGCACGCTCTGAAGATGAT 1307
|||||| ||||||||||| ||||||||| | || ||||||||| ||||||||||||||||
Sbjct 1236 CACTGGAGACACGGATACAGTGATTCCGATAACGGTTACAATGTACGCTCTGAAGATGAT 1295
Query 1308 GAATCTAACGGCTGTTACGGACTGGCTTCCGTGGTTTAGTGAAGGACAGGTGGGAGGTTT 1367
||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 1296 GAATCTAACAGCTGTTACGGACTGGCTCCCGTGGTTTAGCGAAGGGCAGGTGGGTGGTTT 1355
Query 1368 CACAGAGGAATACAAAGGCAATTTTAGATACGCCACAGTGATAGGAGCTGGTCATGAAGT 1427
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 1356 CACAGAGGAATACAAAGGCAATTTTAGGTATGCCACAGTGAAAGGAGCTGGTCATGAAGT 1415
Query 1428 TCCTCTTTACAAACCTAAGGCTGCTCTTACTCTTTTTAAACA-TTTTATCCGCAACTCTC 1486
|||||||||||||||||| | |||| ||||||| |||||||| |||| | | || ||||
Sbjct 1416 TCCTCTTTACAAACCTAATGTTGCTTTTACTCTCTTTAAACAGTTTT-TACTTAATTCTC 1474
Query 1487 CTCTCCCTCTTACCCCTTGA 1506
||||||||||||||||||||
Sbjct 1475 CTCTCCCTCTTACCCCTTGA 1494
> Ahg898595 jgi|Araly1|898595|Al_scaffold_0005_2561
Length=1500
Score = 1607 bits (870), Expect = 0.0
Identities = 1321/1532 (86%), Gaps = 58/1532 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGAACTACAAGACTGGTCGGTAACCACTTGTCTCCTCCTTTTATTGTTT-CAAGC 59
|||||| ||||||||||| |||| |||||||||||||| ||||||| || ||| || ||
Sbjct 1 ATGGGAAAACTACAAGACCGGTCTATAACCACTTGTCTCTTCCTTTTCTT-TTTGCAGGC 59
Query 60 GTCACAAATCCATTGCACGAGCCAAACACATGTTTTAAACCGTCTTTTGTACCGCTCGAA 119
||||||||||||||||| |||||| |||||||| |||||| | | ||||| || ||
Sbjct 60 ATCACAAATCCATTGCACCAGCCAATCACATGTTCGAAACCG-C--CTATACCGATCAAA 116
Query 120 GCGAGGGTTTGGTTCGTCGGTTGACACGAA-CCATTTAAATGCCATCCGTCACTTAAGCG 178
||||||| ||| |||||| | ||||| || ||| |||||||| || |||||||||||||
Sbjct 117 GCGAGGGATTGATTCGTCAATAGACAC-AAGCCACTTAAATGCGATTCGTCACTTAAGCG 175
Query 179 TG--TC-TTCACCCCAAAACACCAGCGGTGTTAACCAACAAGAGCAAAAGGAGAGAGATC 235
|| || ||| | |||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 176 TGTCTCTTTCGCTCCAAAACATAAGCGGTGTTAACCAACAAGAGCAAAGGGAAAGAGATA 235
Query 236 TAATTGAGAATCTGCCCGGACAGCCTTCAGTTAGTTTTAGACAATATGGCGGTTATGTGA 295
||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 236 GAATCGAGAATCTTCCCGGACAGCCTTCAGTTAGTTTTACCCAATATGGCGGTTATGTGA 295
Query 296 CCGTGAATGAGTCAGCAGGTCGATCCTTGTACTATTATTTCGTGGAAGCCACCAAAACCA 355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CCGTGAACGAGTCAGCAGGTCGATCCTTGTACTATTATTTCGTGGAAGCCACCAAAACCA 355
Query 356 AAAAGTCTTTACCCCTTGTTCTATGGCTAAACGGAGGACCTGGTTGTTCCTCCCTATATG 415
|| |||| | ||| |||||||||||||||||||||||||| || || ||||| || ||||
Sbjct 356 AAGAGTCGTCACCGCTTGTTCTATGGCTAAACGGAGGACCGGGCTGCTCCTCTCTGTATG 415
Query 416 GGGCATTTCAAGAGCTTGGTCCATTCCGCATATATGGCGACGGCAAAACACTCTATACCA 475
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 416 GGGCATTTCAAGAGCTTGGTCCATTCCGCATACATAGCGACGGCAAAACACTCTATACCA 475
Query 476 ATCCTTATTCATGGAACAACGTGGCGAACATATTATTCTTAGAATCTCCAGTAGGAACGG 535
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 476 ATCCTTATTCATGGAACAACGTGGCGAACATATTATTCTTAGAATCTCCGGCAGGAACGG 535
Query 536 GATTCTCGTACACGAACAC-AGAGTCGGATTTGGAGAATCCCGGGGACATGAAAGCAGCA 594
|||| |||||||||||||| | | ||||| |||| ||||||||||||||||||||||||
Sbjct 536 GATTTTCGTACACGAACACAACA-ACGGATATGGAAAATCCCGGGGACATGAAAGCAGCA 594
Query 595 GCTGATAAATACATCTTCTTGGTGAAATGGCTGGAGAGGTTTCCGGAATATAAAGGAAGA 654
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GCTGATAACTACGTTTTCTTGGTGAAATGGCTGGAGAGGTTTCCGGAATATAAAGGAAGA 654
Query 655 GAATTTTACATTGCTGGTGAGAGTTACGCCGGGCACTATGTTCCACAACTCGCACAAACC 714
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAATTTTACATCGCTGGTGAGAGTTACGCCGGGCACTATGTTCCACAACTCGCACAAACC 714
Query 715 ATCCTTGTTCATAACAAGAACCAAAACTTCATCAACCTACGTGGCATTTTGATTGGTAAC 774
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 ATCCTTGTCCATAACAAGAACCAAACCTTCATCAACCTACGTGGCATTTTGATTGGTAAC 774
Query 775 CCGACTCTGAACGACATAGTCGAAACAA-CGGGTTCGTTTGA-TTATTTAGTAAGCCATG 832
|||| |||| ||| | ||||| ||| | || ||| || ||| | |||| ||
Sbjct 775 CCGAGTCTGGGCGAGG-A--CGAAATGGGCGG-TGAGTATGAGTT-TTTGGCGAGCCGTG 829
Query 833 CTTTACTCTC-ACAAGATAGTCTCCTTAGCTACAAGGAAAACTGCGCA-ACTG--A-CAC 887
||| || | | |||| | | ||||||||| |||| |||||||| | | || | | |
Sbjct 830 GTTTTGTCCCTA-AAGAAACTTTCCTTAGCTTCAAGAAAAACTGCTTAGA-TGTTAACCC 887
Query 888 TCCAAAA-ATG-GAGGTGGATTGCATCGCATT-GAGTATGAAAATCGACGACGACATaaa 944
| || | || || || ||||||||| || |||| ||||| |||| || | || |
Sbjct 888 TTCAGATGATACGACGT--ATTGCATCG-ATACGAGTCTGAAATTCGAAGAT-ATATTAG 943
Query 945 aaaa-aTGAACCTATACAACATATTGACTCCTACGTGCATAAACGCCACGTTGACCCCGT 1003
||| |||||| ||||||||||||| |||||| |||| ||||| |||||||||| |
Sbjct 944 AAAGCATGAACAAATACAACATATTGGCTCCTATGTGCCTAAACACCACGTTGAC----T 999
Query 1004 TGACTAACCAATCCAAAGAATGCACCACTGTGCTGCAGTATGA-ACCGTGCGGA-ATGCA 1061
| | |||||||||||||||||| || ||| |||||| ||| || ||||||| | |||
Sbjct 1000 --A--A-CCAATCCAAAGAATGCACAACGGTGATGCAGTTTGATAC-GTGCGGAGA-GCA 1052
Query 1062 ATACATAGCAGCTTACTTAAACCGGGAAGACGTTCAGCGTTCCATGCACGTCACGAAATT 1121
||| | | ||||||||| |||| | | || ||||||||||| |||||||||||||||
Sbjct 1053 CTACCTGGAAGCTTACTTCAACCTGCACGAGGTTCAGCGTTCAATGCACGTCACGAAACA 1112
Query 1122 GCCGCACACGTGGATGCTATGTA-ATGAAGCCA-CAGGAT-T-CA-ATTGGAACCAGACG 1176
|||| ||| ||||| ||||||| | |||||| | ||| | | |||||||| |||||
Sbjct 1113 GCCGTACATGTGGACACTATGTAGA-GAAGCCCTC-GGACATACTTATTGGAACAAGACG 1170
Query 1177 GATTATTCTGCATCGATGCTACCTATTCTCAAAGAGCTGATGAAACATGATCAACTTCGA 1236
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1171 GATTATTATGCATCGATGCTACCTATTCTCAAAGAGCTGATGAAACATGAGCAACTTCGA 1230
Query 1237 GTCTGGGTGTACACTGGCGACACGGATACGGTGATTCC-GTTGACAGTTACAATGCACGC 1295
|| ||||||| || ||| ||||||||| |||||||| | || ||||||||||||| ||||
Sbjct 1231 GTTTGGGTGTTCAGTGGAGACACGGATGCGGTGATTTCTGT-GACAGTTACAATGTACGC 1289
Query 1296 TCTGAAGATGATGAATCTAACGGCTGTTACGGACTGGCTTCCGTGGTTTAGTGAAGGACA 1355
|||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||
Sbjct 1290 ACTGAAGATGATGAATCTAACGGTTGTGACGGAATGGCTTCCCTGGTTTAGTGAAGGACA 1349
Query 1356 GGTGGGAGGTTTCACAGAGGAATACAAAGGCAATTTTAGATACGCCACAGTGATAGGAGC 1415
|||||||||||||||||||||||||| ||| |||||||| | |||||||||| ||||||
Sbjct 1350 GGTGGGAGGTTTCACAGAGGAATACAGAGGGAATTTTAGGTTTGCCACAGTGAGAGGAGC 1409
Query 1416 TGGTCATGAAGTTCCTCTTTACAAACCTAAGGCTGCTCTTACTCTTTTTAAACATTTTAT 1475
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TGGTCATGAAGTTCCTCTTTTCAAACCTAAGGCTGCTCTTACTCTTTTTAAACATTTTAT 1469
Query 1476 CC-GCAACTCTCCTCTCCCTCTTACCCCTTGA 1506
|| | |||||||||||||||||||||||||||
Sbjct 1470 CCTG-AACTCTCCTCTCCCTCTTACCCCTTGA 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5