BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52030.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938075 jgi|Araly1|938075|scaffold_502266.1 1858 0.0
> Ahg938075 jgi|Araly1|938075|scaffold_502266.1
Length=1391
Score = 1858 bits (1006), Expect = 0.0
Identities = 1257/1373 (92%), Gaps = 37/1373 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAGAACAGAGACCGGCGACGAATCGTCGGCGAGAAAGATGCGACGTA-AAGTACC 59
||||||| |||||||||||||||||||||||||||||| ||||||||||||| || || |
Sbjct 26 ATGGGGATAACAGAGACCGGCGACGAATCGTCGGCGAGGAAGATGCGACGTAGAA-TA-C 83
Query 60 CA-CGTCGATCGAATCTCTAGACGCCGATATACTGTGCATCATCTTCTCTTTTCTTGATT 118
|| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 84 CACCGTCGATCGAATCTCTAGACGCCGATATACTATGCCTCATCTTCTCTTTTCTTGATT 143
Query 119 TGTTCGACCTCGTTCATTGTACCGTCGTCTGCAATTCCTGGAATGCTGTTATCAA-AAGG 177
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 144 TGTTTGACCTCGTTCACTGTACCGTCGTCTGCAATTCCTGGAATGCTGTCATCAACAA-G 202
Query 178 CTGAAGCTGCTACAAGCTTCTTGCCGGAAGATGCACCATCTCGGTTCCGACTCT-CCCAG 236
|||||| ||||||||||||| ||||||||||||||||||||||||||||| | | |||||
Sbjct 203 CTGAAGTTGCTACAAGCTTCATGCCGGAAGATGCACCATCTCGGTTCCGA-TTTCCCCAG 261
Query 237 TAGCTCCACGTCACTTGATCGTCCAGCTGAGATAGATGTGGAGGATTTTGCGATGAAGCA 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TAGTTCCACGTCACTTGATCGTCCAGCTGAGATAGATGTGGAGGATTTTGCGATGAAGCA 321
Query 297 TCACAAGATGGCATTGTTAAGGGGTCGAATCGAAATTGAGCGATGGGAAGCTCATTCTCA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 322 TCACAAGATGGCATTGTTAAGGGGTCGAATCGAAATTGAGCGATGGGAAGCTCATTCGAA 381
Query 357 CCGGGTTTCTCAGTGTCGAATGAAGAAAGGTTTGCTTCTTACTGGTGTCGGTGATAAGGT 416
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 382 CCGGGTTTCTCAGTGTCGAATGAAGAAAGGTTTGCTTCTTACTGGTGTTGGTGATAAGAT 441
Query 417 TATGCGCCTCTGGTCATTAAAAAGCTACAAATGCATGGAAGAATACTCCCTTCCTGATGC 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 442 TATGCGCCTCTGGTCATTAAAAAGCTACAAATGCATGGAAGAATACTCTCTTCCTGATGC 501
Query 477 TTCTTCCTTGATTGACTTCGATTTTGATGAGAGTAAGAAATTGGAAGTTGTA-TCTCTAG 535
| |||||||||||||||||||||||||||||| || | | | || | | || || |
Sbjct 502 TGCTTCCTTGATTGACTTCGATTTTGATGAGA--AA-ACCTC--A-GTCG-AGTCACT-G 553
Query 536 CATGGGAGTATTT-TGATTCtgttgttgttgttgttgttgagattgttggcttggttgGT 594
|| | | |||| ||| | || | |||||| | ||| | |||||
Sbjct 554 -ATATG-G-ATTTCTGAAACCACCA--GTA-TAATTGTTG-GCTTG--G--TTGGT---- 598
Query 595 ACCCGCATTAGCATATGGAGGAGAAATGGACAAAGAAGCATTTTTCCATCTCGTGCAGGC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 ACCCGCATTAGCATATGGAGGAGAAATGGACAAAGAAGCATTTTTCCATCTCGTGAAGGC 658
Query 655 ACCTTTCCTAAAGGCCTTTGTATGCGTTACATTGACCCAGAAGCTGTAGTTGGATGCGAG 714
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 659 ACCTTTCCTAAAGGCCTTTGTATGCGTTACATCGACCCAGAAGCTGTAGTTGGATGTGAG 718
Query 715 GATGGAACAGCTCGTGTATTTGATATGTACAGTAAGACATGTTCACAGATCATTAGGACT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GATGGAACAGCTCGTGTATTTGATATGTACAGTAAGACATGTTCACAGATCATTAGGACT 778
Query 775 CAGGGTGGGCCAATAACATGCTTATCTCTAAGCGATAATCAACTATTTCTTAGTGGGTCG 834
|||||||||||||| || ||||||||| | || || || ||| ||||||||||||||||
Sbjct 779 CAGGGTGGGCCAATTACGTGCTTATCTTTGAGTGAGAACCAAGTATTTCTTAGTGGGTCC 838
Query 835 TCACTCGGGAGAGTAACAGTATCTGACCCTTTGATGGATCAACCAGTGGCCACTCTTAAA 894
||||| ||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 839 TCACTAGGGAGAGTAACAGTATCTGACCCTTTGTTGGATCAACCAGTGGCTACACTTAAA 898
Query 895 TCCACGATAACTGCAGGAGGTATACAGACAATCTGTTTTAACCAAGGCACTAATCTCGCC 954
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 TCCACAATAACTGCTGGAGGTATACAGACCATCTGTTTTAACCAAGGCACTAATCTCGCG 958
Query 955 TTCATTGGAACAACTGGTGGATATGTTTCATGCTGGGACCTCAGGAAAATGG-ATAGATT 1013
|||| ||||||||| |||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 959 TTCACTGGAACAACGGGTGGATATGTTTCATGCTGGGACCTTAGGAAAATGGGACGG-TT 1017
Query 1014 GTGGGAAAAACGAGTGAGTCCTAATGTCGTGTACTCAATACAACAGCTAAGGAATGACAC 1073
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1018 GTGGGAAAAACGAGTGAGTCCTAATGTCGTGTACTCAATACAACAGCTGAGGAATGACAC 1077
Query 1074 ATCGGTTATGGTAGCTGGTGGAATAGACGGTGTGCTGCGTA-TGATTGATCAGAAGAGTG 1132
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 1078 ATCGGTAATGGTAGCTGGTGGAATAGACGGTGTGCTGCG-AGTGATTGATCAGAATAGTG 1136
Query 1133 GAAGGGTTTTATCTAGAGTTATAATGGACGATAAATTCTCCACAACATCAACAAGGAACA 1192
|||| |||||||||||| |||||||||| ||||| |||| ||||||| | |||| |||
Sbjct 1137 GAAGAGTTTTATCTAGATTTATAATGGAGGATAAGGTCTCAACAACATTGAGAAGGGACA 1196
Query 1193 ACCAAGTGGTGATAGAGAAAAGAAGAGGAAAAAGAGTTTCTCAAGACATGGAGATTGATA 1252
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1197 ACCAAGTGGTGATAGAGAAAAGAAGAGGAAAAAGAGTTTCTCAAGATATGGAGATGGATA 1256
Query 1253 AAATCGAAAGGAAAGTTCGGCCTCAAATCAGTTGCATAGCAATGGGGATGAAGAAGATGG 1312
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1257 AAATCGAAAGGAAAGTTCGGCCCCAAATCAGTTGCATAGCAATGGGGATGAAAAAGATAG 1316
Query 1313 TAACGGCTCACAATGGTAAATGCATAAGTGTATGGAAGTTCAATCTCTCGTAA 1365
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1317 TAACGGCTCACAATGGTAAATGCATAAGTGTATGGAGGTTCAATCTCTCGTAA 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5