BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52040.1

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938076 jgi|Araly1|938076|scaffold_502267.1                        494    3e-139
  Ahg938075 jgi|Araly1|938075|scaffold_502266.1                        111    4e-24 


> Ahg938076 jgi|Araly1|938076|scaffold_502267.1
Length=315

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 290/301 (96%), Gaps = 1/301 (0%)
 Strand=Plus/Plus

Query  40   CTAGAAACGACGATCCAAAGATGACGCAGAAGAGCAATCAGTTCAAGGGCCAACAGAAGA  99
            |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct  2    CTAGAAACGACGAT-CAAAGATGACGCAGAAGAGCAACCAGTTCAAGGGCCAACAAAAGA  60

Query  100  GGAAGACTATTGCTCCTAATCGCCATGGCAAATCCATTCAAACTCGCAAAGGGAAGAGAA  159
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  61   GGAAGACTATTGCTCCAAATCGCCATGGAAAATCCATTCAAACTCGCAAAGGGAAGAGAA  120

Query  160  ATGTGAAACCAACAAAGATGACGAAAGAGATGGACACTGATCGGGAGCTTACGAAATTCA  219
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATGTGAAACCATCAAAGATGACGAAAGAGATGGACACTGATCGGGAGCTTACGAAATTCA  180

Query  220  TAAACCATTGCAATGAAGTGAAAGCAACTAATGCAGCTTGTAAAGAAGGTGGTCAACTCA  279
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct  181  TAAACCATTGCAATGAAGTGAAAGCAACTAATGCAGCTTGCAAAGAAGGTGGTCAACTTA  240

Query  280  ATATCATCAAAGCTGAATCTCAACCTGAGCCATCCAAGAAATCCGCCAAATAGACAACAA  339
            ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct  241  ATATCATCAAAGCTGAATCTCAAGCTGAGCCTTCCAAGAAATCTGCCAAATAGACAACAA  300

Query  340  A  340
            |
Sbjct  301  A  301


> Ahg938075 jgi|Araly1|938075|scaffold_502266.1
Length=1391

 Score =  111 bits (60),  Expect = 4e-24
 Identities = 70/75 (93%), Gaps = 0/75 (0%)
 Strand=Plus/Minus

Query  456   ACAAGTTTATTGTTACTTTACGAGAGATTGAACTTCCATACACTTATGCATTTACCATTG  515
             |||||||| |||  ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1386  ACAAGTTTCTTGCGACTTTACGAGAGATTGAACCTCCATACACTTATGCATTTACCATTG  1327

Query  516   TGAGCCGTTACCATC  530
             ||||||||||| |||
Sbjct  1326  TGAGCCGTTACTATC  1312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19306728034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5