BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52050.3
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485561 jgi|Araly1|485561|fgenesh2_kg.5__1553__AT3G52050.3 2241 0.0
> Ahg485561 jgi|Araly1|485561|fgenesh2_kg.5__1553__AT3G52050.3
Length=1543
Score = 2241 bits (1213), Expect = 0.0
Identities = 1433/1532 (94%), Gaps = 43/1532 (3%)
Strand=Plus/Plus
Query 76 ACCCTTTCTCATTTTTGGAAGGTTCTTTCAAAATCCTTTCTTCGATTGCTTTCGGATTCT 135
|||||||||||||||||||| |||||| || ||| | | | || | |||||| | |
Sbjct 1 ACCCTTTCTCATTTTTGGAATGTTCTTCCACAAT-C---C-T---TT-C-TTCGGA-T-T 48
Query 136 CGCTCGCTTCTTCGATTTTTGGTTTTGATTCATGGTGAATGTGTTTCCTCCGCTAAGGTT 195
|||| |||||||| |||||||||| |||||||||||||||| || |||||| |||||
Sbjct 49 --CTCGATTCTTCGA-TTTTGGTTTTCATTCATGGTGAATGTG-TT--TCCGCTCAGGTT 102
Query 196 AAACGCTCTTCTTCTTCATGACAGTACTTTCAGTGACGTCATGACGCTGCATCTGTATCA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 AAACGCTCTTCTTCTTCATGACAGTACTTTCAGTGACGTCATGACGCTGCATCTGTATCA 162
Query 256 TCACTCCCGTTTTCTATGGAGGAATCTCTGTTTTCCTCGGAGTGTTGGAAACTTGTGTAA 315
||||| ||||||||||||||||||||||||||| ||||| | ||||||| ||| ||||
Sbjct 163 CCACTCTCGTTTTCTATGGAGGAATCTCTGTTTTACTCGGCGAATTGGAAATTTGCGTAA 222
Query 316 TCGGAACTGTTCTCTCATCTCTCCTTCCCTTGCACGCTCTGCGAAGTACTATTGCAGTT- 374
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 223 TCGGAACTCTTCTCTCATCTCTCCTTCCCTTGCACGCTCCGCGAAGTACTATTGCAGTTC 282
Query 375 --CC-G-----T------AGCTGTTTCTGAATTCTCAAATGAAGCAGCTAGTGGCAGCAC 420
|| | | |||||| ||||||||||| |||||||||||| |||||| |
Sbjct 283 CACCTGTAATTTGGACGCAGCTGTCTCTGAATTCTCCAATGAAGCAGCTCGTGGCAATAT 342
Query 421 ATTGACTTC-TAT--AAGTGAAGA---TGTTACGCCACAGTCGATAAAATATCCTTTCAA 474
|||||||| ||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct 343 GTTGACTTCTTATAAAAGTGAAGATGTTGTTGCGCCAGAGACGATAAAATATCCTTTTAA 402
Query 475 GTCAGAAGAAAGAGTAGCTAGTACTGCTGCTTCTTCAAATGGCAGAGTGATGCTTATTGA 534
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 403 GTCAGAAGAAAGAGTAGCAAGTACTGTTGCTTCTTCAAATGGCAGAGTGATGCTTATTGA 462
Query 535 TGGGACATCGATTATATACAGGGCTTATTATAAGCTTTTAGCAAGGTTGAATCATGGTCA 594
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TGGGACATCTATTATATACAGGGCTTATTATAAGCTTTTAGCAAGGTTGAATCATGGTCA 522
Query 595 TCTGGCTCATGCTGATGGAAATGCGGACTGGGTTTTAACAATATTTTCATCTCTTTCTCT 654
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 523 TCTGGCTCATGCTGATGGAAACGCCGACTGGGTTTTAACAATATTTTCATCTCTTTCTCT 582
Query 655 TCTGATTGATGTTTTGAAATTTCTCCCATCCCATGTGGCGGTGGTGTTCGACCATGATGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TCTGATTGATGTTTTGAAATTTCTCCCATCCCATGTGGCGGTGGTGTTCGACCATGATGG 642
Query 715 AGTTCCTTATGGCACTACTTCTAATTCATCTACAGGTTATCGTTCTGCAAAAGGCATGAA 774
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 643 AGTTCCTTATGGCACTACTTCTAATTCACCTACAGGTTATCGGTCTGCAAAAGGCATGAA 702
Query 775 CTTCCGTCATACTCTCTACCCAGCATATAAAAGTAATCGTCCTCCCACACCTGATACCAT 834
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 703 CTTCCGTCATACTCTCTACCCTGCCTATAAAAGTAATCGTCCTCCCACACCTGATACCAT 762
Query 835 AGTACAAGGACTTCAATATCTCAAAGCGTCCATCAAGGCAATGTCTATAAAAGTTATAGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 763 AGTACAAGGACTTCAATATCTCAAAGCGTCCATCAAGGCAATGTCTATAAAGGTTATAGA 822
Query 895 GGTGCCAGGTGTAGAAGCTGATGATGTTATTGGAACACTGGCTATGCGAAGCATTAGTGC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GGTGCCAGGTGTAGAAGCTGATGATGTTATTGGAACACTGGCTATGCGAAGCATTAGTGC 882
Query 955 CGGTTTCAAAGTCCGAGTTGTCTCTCCAGACAAAGACTTCTTTCAGATTCTTTCTCCCTC 1014
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 883 CGGTTTCAAAGTCCGAGTTGTCTCTCCGGACAAGGACTTCTTTCAGATTCTTTCTCCCTC 942
Query 1015 GTTGCGTCTTCTTCGACTAACACCACGCGGATCAGAGATGGCTTCTTTTGGAATGGAAGA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GTTGCGTCTTCTTCGACTAACACCACGCGGATCAGAGATGGCTTCTTTTGGAATGGAAGA 1002
Query 1075 TTTTGCTAAAAAGTTTGGAAATTTGGAACCAGCACAATTTGTTGATATCATCGCCCTTGC 1134
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1003 TTTTGCTAAAAAGTTCGGAAATTTGGAACCAGCACAATTTGTTGATATAATCGCCCTTGC 1062
Query 1135 TGGAGACAAGTCTGATAATATTCCAGGAGTTGATGGTATTGGGAATGTGCACGCAGTGGA 1194
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1063 TGGAGACAAGTCTGATAATATTCCAGGAGTTGATGGCATTGGGAATGTGCACGCAGTGGA 1122
Query 1195 ACTGATATCTAGATTTGGCACGTTGGAGAATCTGTTGCAGTCTGTGGATGAGATCAAAGA 1254
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1123 ACTGATATCTAGATTTGGCACGTTGGAGAATCTCTTGCAGTCTGTGGATGAGATCAAGGA 1182
Query 1255 AGGAAAAATAAAGGAGTCTCTAATAGCTAGTGCGGATCAAGCCATTCTTAGCAAGAAATT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AGGAAAAATAAAGGAGTCTCTAATAGCTAGTGCGGATCAAGCCATTCTTAGCAAGAAATT 1242
Query 1315 GGCACTGTTACGGTCTGATCTCCCAGATTACATAGTACCGTTCGACACGAAAGATCTTAC 1374
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1243 AGCACTGTTACGGTCTGATCTCCCAGATTACATAGTACCGTTTGACACGAAAGATCTCAC 1302
Query 1375 TTTTAAGAAACCAGAGGACAATGGTGAGAAATTGAGTAGCCTGTTAATCGCGATTGCGGA 1434
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1303 TTTTAAGAAACCAGAGGACAATGGGGAGAAATTGAGTAGCCTGTTAATCGCTATTGCAGA 1362
Query 1435 TTACGCAGAAGGATTTTCAGCTGATCCAGTCATCAGAAGAGCTTTCAGGTTGTGGGAAAA 1494
||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1363 TTATGCAGAAGGATTTTCAGCTGATCCAGTCATCCGAAGAGCTTACAGGTTGTGGGAAAA 1422
Query 1495 ACTGGAAGCAGTGCCATGATGATATTTT--ATGCATCTTTTTTCTTACTCGT-T-TCTTT 1550
|||||||||| ||||||||||||||||| |||||||||||||||||||| | | |||||
Sbjct 1423 ACTGGAAGCAATGCCATGATGATATTTTTTATGCATCTTTTTTCTTACTCTTGTCTCTTT 1482
Query 1551 GTATTGGGTACATAAAATAGAGTAAGTTCAAG 1582
|||||||||||||||||||||||||| |||||
Sbjct 1483 GTATTGGGTACATAAAATAGAGTAAGCTCAAG 1514
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1622 ACTTTCACAATCCTTTTGTAAAGCATGCT 1650
|||||||||||||||||||||||||||||
Sbjct 1515 ACTTTCACAATCCTTTTGTAAAGCATGCT 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5