BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52060.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485566 jgi|Araly1|485566|fgenesh2_kg.5__1558__AT3G52060.2 1927 0.0
> Ahg485566 jgi|Araly1|485566|fgenesh2_kg.5__1558__AT3G52060.2
Length=1695
Score = 1927 bits (1043), Expect = 0.0
Identities = 1229/1311 (94%), Gaps = 44/1311 (3%)
Strand=Plus/Plus
Query 20 ATTATATAAATAGAGAGAGAACAGCCCCACGTA-AACAAATAGCGATAGAGCAACTGTGT 78
||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATTATTTAAATAGAAAGAGAAGAGCCCCACGTATAACAAATAGCGATAGAGCAACTGTGT 60
Query 79 CGATTGTCCCAAATAATTTTAAAAATAATTTCACGTGTCCCCATTTTGCTGACGTCATTA 138
||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CGATTGTCCCACAT-ATTTT-AAAAT-ATTTCACGTGTCCCCATTTTGCTGACGTCATTA 117
Query 139 TTC-CCCTTTTTCCTTTTTATTGTCACATCAGAATTTTTTCTAACTCATTCATTTCAATC 197
||| |||||||||||||||||||||||||| | ||| | || ||| |||
Sbjct 118 TTCTCCCTTTTTCCTTTTTATTGTCACATC---A-------TAA-T--TT--TTT--ATC 160
Query 198 AAtcttcttcttcttcttcttcttcttcCTCAGAGAAATTCTGTGTTGTTGTATACAGAG 257
|||| |||||||||||||||||||||||||| |||||||||||||||||||| | | ||
Sbjct 161 AATCATCTTCTTCTTCTTCTTCTTCTTCCTCTGAGAAATTCTGTGTTGTTGT-TTC--AG 217
Query 258 AGATGttctcatcttctacactcgtttattctctatctctcttcctctctctttctcttc 317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 218 AGATGTTCTCTTCTTCTACACTCGTTTATTCTCTATCTCTCTTCCTCTCTCTTTCTC-T- 275
Query 318 tcttcttcctcttcatcctctcaccacacatccttctctcttcctctaccctcatttccA 377
|| || | || | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 276 TC-TC-T--TC-T--TCCTCTCACCACACATCCTTCTCTCTTCCTCTAACCTCATTTCCA 328
Query 378 CCGCCGATGACCTAGACGACCTCTCTCTCTTCCACCGCGCCGTCGTCTCTTCCTCCACCA 437
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 329 CCGCCGATGACCTAGACGACCTCTCTCTCTTCCACCGCGCCGCCGTCTCTTCCTCCA-C- 386
Query 438 ACAACAACCGTCGTCTCATCTCCCTCTCTCCAAATCCACCCCCAAAGATCGCTTTCCTCT 497
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 387 -CAACAACCGCCGTCTCATCTCCCTCTCTCCAAATCCTCCCCCTAAGATCGCTTTCCTCT 445
Query 498 TCCTAACAAACTCCGATCTAACCTTCTTACCTCTCTGGGAAAGCTTCTTCCAAGGTCACC 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TCCTAACAAACTCCGATCTAACCTTCTTACCTCTCTGGGAAAGCTTCTTCCAAGGTCACC 505
Query 558 AAGATCTCTACAACGTTTACATCCACGCAGATCCAACCTCCTCCGTCTCTCCTCTTCTCG 617
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 506 AAGATCTCTACAATGTTTACATCCACGCAGATCCAACCTCCTCCGTATCTCCGCTTCTCG 565
Query 618 ATTCTTCATCAATCAACGCTAAGTTCATCCCGGCGAGAAGAACCGCACGAGCTTCTCCGA 677
|||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 566 ATTCATCGTCAATCAACGCTAAATTCATCCCGGCGAAAAGAACCGCACGAGCTTCTCCGA 625
Query 678 CGTTAATCTCCGCCGAACGACGATTACTAGCAAACGCAATCCTCGACGATCCTAACAATC 737
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CGCTAATCTCCGCCGAGCGACGATTACTAGCAAACGCAATCCTCGACGATCCTAACAATC 685
Query 738 TCTATTTCGCTTTAATCTCACAACACTGTATCCCTCTCCATTCCTTCTCTTACATCCACA 797
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 686 TCTATTTCGCTTTAATCTCACAACACTGCATCCCTCTCCATTCCTTCTCTTACATCCACA 745
Query 798 ACCACCTCTTCTCCG--A--TC--ATCATCAACAAAGCTTCATCGAGATCCTCTCCGATG 851
|||||||||||||| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 746 ACCACCTCTTCTCCACCAACTCCGATCATCACCAAAGCTTCATCGAGATCCTCTCCGATG 805
Query 852 AACCGTTCCTTCTGAAACGATACAACGCAAGAGGAGACGACGCGATGCTTCCTGAGATCC 911
|||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 806 AACCTTTTCTTCCGAAACGATACAACGCAAGAGGCGACGACGCGATGCTTCCTGAGATCC 865
Query 912 AGTACCAAGACTTCCGTGTTGGATCTCAGTTCTTCGTATTAGCGAAACGTCATGCTCTAA 971
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 866 GGTACCAAGACTTCCGTGTTGGATCTCAGTTCTTCGTTTTAGCGAAACGTCATGCTCTAA 925
Query 972 TGGTGATCAAAGAGAGAAAGCTATGGAGGAAATTCAAATTACCATGCCTTGATGTTGAAT 1031
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TGGTGATCAAAGAGAGAAAACTATGGAGGAAATTCAAATTACCATGCCTTGATGTTGAAT 985
Query 1032 CTTGTTACCCTGAAGAACATTATTTTCCGACTTTGTTGTCTCTTGAGGATCCTCAAGGAT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 986 CTTGTTACCCTGAAGAACATTATTTTCCGACTTTGTTGTCTCTTGAGGATCCTAAAGGAT 1045
Query 1092 GTAGTCACTTTACACTCACACGTGTTAATTGGACCGGTAGTGTTGGTGGTCATCCTCACA 1151
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GTAGTCACTTCACACTCACACGTGTTAATTGGACCGGTAGTGTTGGTGGTCATCCTCACA 1105
Query 1152 CGTACGATGCCTCTGAGATCTCGCCGCAGCTGATTCACTCTCTGCGGAGATCTAATTCGA 1211
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1106 CGTACGATGCCTCTGAGGTCTCGCCGCAGCTGATTCACTCGCTGCGGAGATCTAATTCGA 1165
Query 1212 GTTTAGACTATTTCTTCGCCAGAAAATTCACGCCGGAGTCATTGCAACCGCTTATGGAGA 1271
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1166 GTTTAGACTATTTCTTCGCCCGAAAATTCACGCCGGAGTCATTGCAACCTCTTATGGAGA 1225
Query 1272 TTGCAGATGCTGTGATCTTTAGGGATTGAATTCGGTGAAAGTAAATTAGGT 1322
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1226 TTGCAGATGCTGTGATCTTTAGGGATTGAAT-CGGTGAAAGTAAATTAGGT 1275
Score = 431 bits (233), Expect = 9e-120
Identities = 319/357 (89%), Gaps = 19/357 (5%)
Strand=Plus/Plus
Query 1319 AGGTTTCA-G-AT-ATCATCAT-AAGGAAGGTTTAGGAAGAAGCTTGTGTTGGCGCTCGA 1374
|||||||| | || |||||||| || ||||||||||||| ||| |||| |||||||||||
Sbjct 1350 AGGTTTCAGGTATCATCATCATCAA-GAAGGTTTAGGAACAAGTTTGTATTGGCGCTCGA 1408
Query 1375 AGAAGAGTGGCTAAAT-AAAGATG-AACTTCtgtgtgtgtgtgtgaaaattgctgtgttt 1432
||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1409 AGAAGAGTGGC-AAATAAAAGATGAAAC-TCTGTGTGTGTGTGTGAAAATTGCTGTGTCT 1466
Query 1433 tttaagcttttgtgtgtC-TCTAGGGAAGGTAGAGATATGGGAAAATGGATGTAAAAAAG 1491
|||||||||||||||||| | |||||||||| || || |||| |||||||||||||
Sbjct 1467 TTTAAGCTTTTGTGTGTCATTTAGGGAAGGT-TAG--AT-GGAAGTTGGATGTAAAAAAA 1522
Query 1492 AATGTAAATAGAGAG-CCCCCAAAGGCAAAGTGAGAGCATCATCATTAAGATAAAGCCAA 1550
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1523 AATGTAAATAGAGAGAGCCCCAAAGGCAAAGTGAGAGCATCATCATTAAGATAA-GCCAA 1581
Query 1551 ATCGGCTTTTCTTTTGTAATTCAGCTCCTTTCCACGGGAGAGAGAGGGAATGGCAAAAGT 1610
|| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1582 ATAGGCTTT-CTTTTGTATTTCAGCTCCTTTCCACGGGAGAGAGAGGGAATTGCAAAGG- 1639
Query 1611 GTTGTTCCCTCTCTTTTGTTTCGAAAAAAGTGTGAATGAAAAGATCTTTGTTATTTC 1667
||| |||||||||||||||||||| || ||||||||||||| ||||||| ||||||
Sbjct 1640 GTTATTCCCTCTCTTTTGTTTCGATTAA-GTGTGAATGAAAAAATCTTTGGTATTTC 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5