BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52072.1

Length=1154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938080 jgi|Araly1|938080|scaffold_502271.1                        562    2e-159


> Ahg938080 jgi|Araly1|938080|scaffold_502271.1
Length=383

 Score =  562 bits (304),  Expect = 2e-159
 Identities = 355/378 (94%), Gaps = 9/378 (2%)
 Strand=Plus/Minus

Query  727   AGCTAGC-TTAGCTACTACCATGA-AGATTTGGGGAAGCTGAGATGTTGCCAGGAGAAGT  784
             ||||| | || |||| ||||||||  || ||||||||||||||||||||||| | |||||
Sbjct  377   AGCTATCGTT-GCTATTACCATGAGGGA-TTGGGGAAGCTGAGATGTTGCCAAGCGAAGT  320

Query  785   AAGCACAAACCAATAGTTGAGAGATATAAACATAAACAGCAAAAGAGAGACTCATAAGCA  844
             ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  319   AAGCACAAACCAAAAGTTGAGAGATATAAACATAAACTGCAAAAGAAAGACTCATAAGCA  260

Query  845   TCAGGTCCTTGACGTCTCCTTTCTTCTTCTCTGGCTTCAGATTCTTCCC-AATCTTCCCA  903
             |||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct  259   TCAGATCCTTGACGTCTCCTTTCTTCTTCTCTGGCTTCAGATTCTTCCCAAAT-TTCCCA  201

Query  904   GCCTCTGAAATCATCCTTCTCAATGTTCTCTGGATCACTCCTTCATTCTCTTCTGGTAAT  963
             ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct  200   GCCTCTGAAATCATCCTCCTCACTGTTCTCTGGATCACTCCTTCATTCTCTTCTGGTAAT  141

Query  964   TTCTGCTTCCGACAAGACATCACTCTCATAGATCTAACTCCGTGTCTGCTTGAGGCTTGT  1023
             |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  140   TTCTGCTTCCGACAAGACATAACTCTCATAGATCTAACGCCGTGTCTGCTTGAGGCTTGT  81

Query  1024  CTCTTTGTACGGTGGTTAGTGCAGAGTGGGTGGTAGTAGAAGGTGGTGGAGAGAGCCGCC  1083
             |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct  80    CTCTTTGTACGGTGGTTAGTGCAGAGTGGGTGGTAG-A-A-GGTGGTGGAGAGAGCCGCC  24

Query  1084  ATGAGAAGATGAATAGAA  1101
             |||||||||||||| |||
Sbjct  23    ATGAGAAGATGAATTGAA  6



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43040773293


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5