BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52080.1
Length=2561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485568 jgi|Araly1|485568|fgenesh2_kg.5__1560__AT3G52080.1 3943 0.0
> Ahg485568 jgi|Araly1|485568|fgenesh2_kg.5__1560__AT3G52080.1
Length=2559
Score = 3943 bits (2135), Expect = 0.0
Identities = 2422/2563 (94%), Gaps = 9/2563 (0%)
Strand=Plus/Plus
Query 4 ACAATAAGCCCTAAGAACGAATAAGGCAACTACA--GAGAGAAAAGATGAATTCAACTAC 61
|||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1 ACAATAAGCCCTTCGAACGAATAAGGCAACTACAGGGAGAGAAAA-ATGAATACAACTAC 59
Query 62 AACAAAAAACGTTTGTGGAGACAAATGGTACCTTAACCTAGACAGGCCAGAAGAGGCATT 121
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 60 AACAAAAAACGTTTGTGGAGACAAATGGTACCTTAACCTAGACAAGCCTGAAGAGGCATT 119
Query 122 GAAGATTCTTGTATTCATTGCCATTTTCGTCGTCCGAACTCTCCTCCATTATCTCATGAA 181
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 120 GAAGATTCTTGGATTCATTGCCATTTTCGTCATCCGAACTCTCCTCCATCATCTCATGAA 179
Query 182 GCCTCTAGGCCAACCTTACCTCACCACCGACTTTGCTATAGGGCTAATTCTAGGTAATAT 241
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 GCCTCTAGGCCTACCTTACCTCACCACCGACTTTGCTATAGGGCTAATTCTAGGTAACCT 239
Query 242 T-CCAAGGTTTCGAGGGGCATTCTCGGGGCCTTACTCTATAACCCTCAACAACATAATAG 300
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 TCCCAA-GTTTCGAGAGGCATTCTCGGGGCCTTACTCTATAACCCTCAACAACATAATCG 298
Query 301 AATTTGGAATGATCTGCCATATGTTTGTCATGGGTCTAGAGATGAATCCAAGCGTTCTTC 360
|||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 299 AATTCGGTATGATCTGCCATATGTTTGTGATGGGTCTAGAGATGAATCCAAGCGTCCTTC 358
Query 361 TCAGACCACCAACCAAAGATGCATTCATTGCCTACACAAGCATGATCACGACCTTTGTTC 420
||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct 359 TCAGACCACCAACCAAAGACGCATTCATAGCATACACAAGCATGATTACGACCTTTGTTC 418
Query 421 TCGCCTTTGTCACAACTCCTTTCCTCCACTATACCAAAACTTCTCCTTACATTTTCTCCC 480
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 TCGCCTTTGTCACAACTCCTTTCCTCCACTATACCAAAACCGCTCCTTACATTTTCTCCC 478
Query 481 TCGCCCTCTCCCTCATGGCCTCAAGCACCGGTTCTCCTATCCTAACCCGCGTCATCGCCA 540
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 479 TCGCCCTCTCCCTCATGGCCTCAAGCACCGGTTCCCCCATCCTAACCCGCGTCATCGCCA 538
Query 541 ATCTCAAAATCAGAAAATCCGATCTTGGAAAACTTGCATCAGCCGCAGGTGTCCATACGG 600
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 ATCTCAAGATCAGAAAATCCGATCTTGGAAAACTTGCATCAGCCGCAGGTGTTCATACGG 598
Query 601 ACATGATCTCTACCTTGCTTTACTGCTTCGGCTTCATTTTCTTCCCTACGGAGAAACCTC 660
| ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 599 ATATGATCTCTACCTTGTTTTACTGCTTCGGCTTCATTTTCTTTCCTACAGAGAAACCTC 658
Query 661 TCGCTCGTCCTCTCCACAGATTCTTCAGAGCCCTCCTCATGTTTTGCCTCTTCCTCGCTC 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGCTCGTCCTCTTCACAGATTCTTCAGAGCCCTCCTCATGTTTTGCCTCTTCCTCGCTC 718
Query 721 AGGTCACTTTCACTTCCATTGTATCCCCAATCTTTCTTAATTGGGTCAACAACGAGAACC 780
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGTCACTTTCACTTCCATCGTATCCCCAATCTTTCTTAATTGGGTCAACAACGAGAACC 778
Query 781 CTGAAGGTAAACCACTCAAGGGGTCACACCTTGTTATGTCCCTGGCATTTGTCGTCTTGA 840
||||||| || ||||||||||| || ||||| |||||||| || |||||||| |||||||
Sbjct 779 CTGAAGGCAAGCCACTCAAGGGATCTCACCTCGTTATGTCACTCGCATTTGTTGTCTTGA 838
Query 841 TCTGCAGTTTCCCAACTTGGCCACCTGAATCAATGTACAACCCAATTCTCAGTGCATTCA 900
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 839 TCTGTAGTTTTCCAACCTGGCCACCTGAATCAATGTACAACCCAATTCTCAGCGCCTTCA 898
Query 901 CGGCTGGTCTCTTCCTTCCAAACAAAGGAAGAATGTCGAAATGGATCATCAACAAAATCA 960
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 899 CGGCTGGTCTTTTCCTTCCAAACAAAGGAAGAATGTCCAAATGGATCATCAACAAAATTA 958
Query 961 ATTACTTGCTCAGCACGGTCTTCTACCCTATCTTCTTCTTCTGGGTTGGATTCATAATCC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 ATTACTTGCTCAGCACGGTCTTCTACCCTATCTTCTTCTTCTGGGTTGGATTTATAATCC 1018
Query 1021 ACATGAGAAACTTTGACATTACTGACAAAATGGCGTGGGTAAGATTCTTTTCTCTTCTTG 1080
||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||| |
Sbjct 1019 ACATGAGAAACTTTGACATCACTGACAAAATGGCGTGGGCAAGGTTCTTTGCTCTTCTCG 1078
Query 1081 GCACTGTTATAGCCGGAAAAGTCACCGGAACAGTCTTGTGTGGTTTACTACTCGGTTATC 1140
||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 GCACTGTCATAGTCGGAAAAGTCACCGGAACAGTCCTGTGTGGTTTACTACTCGGTTATC 1138
Query 1141 ATGTCCCGGAAACCGCATCCTTAGGACTGCTTTTGACCACTAAAGGCCATTTTCATGTCT 1200
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1139 ATGTCCCGGAAACCGCATCCTTAGGACTGCTTTTGACCGCTAAAGGCCATTTTCATGTAT 1198
Query 1201 ACTTGGCAGCTTTAGCCATTCGGACTAACAGGGTGAAAAGTACGACCGGTGCATTGATCA 1260
|||||||||| |||||||||||||| ||||||||||||| ||| ||||||||| ||||||
Sbjct 1199 ACTTGGCAGCCTTAGCCATTCGGACAAACAGGGTGAAAAATACAACCGGTGCAATGATCA 1258
Query 1261 TATTTATCATTG-TCTTCACGGTGGTCTACTCCCCATTCGTGGTCATGGACATCATCAAA 1319
| ||| | |||| || | ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1259 TTTTTGTTATTGTTC-TAACGGTTGTCTACTCCCCTTTCGTGGTCATGGACATCATCAAA 1317
Query 1320 CGCGCTAGAAAGCGGGTGCCTGTGCACATCATGGCGCTTCAATGGCTCGATCCAACAACT 1379
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1318 CGCGCTAGAAAGCGAGTGCCAGTGCACATCATGGCACTTCAGTGGCTCGATCCAACAACT 1377
Query 1380 GAACTTCGGATCTTGATTGGTCTCCACGGTCCCCACAACATTGGTTCTACGCTCAACGTT 1439
|||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1378 GAACTTCGTATCTTGATCGGTCTCCACGGTCCCCACAACATCGGTTCCACGCTCAACCTT 1437
Query 1440 ATGGAGATCTGCCATGGTGGCCGTGAGCCGGGTTCCATATTCTATGCGACTGACATGGTG 1499
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1438 ATGGAGATCTGCCATGGTGGACGTGAGCCAGGATCCATATTCTATGCGACTGACATGGTG 1497
Query 1500 GAGTTGACTGATGAGATTGCAGCCACGCTGAAGAAGGGCGGAGGAGCCGGTCAGAGTAAT 1559
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1498 GAGTTGACTGATGAGATTGCAGCCACACTGAAAAAGGGCGGAGGAGCGGGTCAGAGTAAT 1557
Query 1560 GATTCAGTGACGGTAACGGATAGGTCGGTGACGGAAATGAGAGAGAGTATAACGGCAGCT 1619
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1558 GATTCAGTGACGATAACGGATAGGTCAGTGACGGAAATGAGAGAGAGTATTACGGCAGCT 1617
Query 1620 GTGAATGGGTACGGAGAGCTCCGCAATGGACAAGGTGTGACAGTGCGGCGGATGCTGGCG 1679
||||||||||| ||||||||||| || || ||||||||||||||| |||||||| ||||
Sbjct 1618 GTGAATGGGTATGGAGAGCTCCGTAACGGCCAAGGTGTGACAGTGAGGCGGATGTTGGCT 1677
Query 1680 TTGTCCACGTTTGTGACCATGGCCCATGACGTCTGCGGTTTGGCTGATGAACTTATGGTT 1739
||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct 1678 TTGTCCACGTTTGTGACCATGGCGCAAGACATCTGTGGTTTGGCTGATGAACTTATGGTT 1737
Query 1740 TCCATTATAATTCTACCGTTCCATAAACGGCTGAATCCTGATGGTACTCTCGATGCTGGT 1799
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 1738 TCCATTATAATTCTACCATTCCATAAACGGCTGAATCCTGATGGCACTCTTGATTCTGGC 1797
Query 1800 CATGCTGGGTTCCGTCATGTGAACCGCAAGATTCTGAAGAACGCACCATGTTCAGTAGGA 1859
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1798 CATGCCGGGTTCCGTCATGTGAACCGCAAGATTCTGAAGAACGCACCATGTTCGGTGGGA 1857
Query 1860 ATTCTTGTGGATAGGTCGTTCGGGCAAACAGAAGAGGCATGGAGACCAGGAGCGTCCATG 1919
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1858 ATTCTTGTGGATAGGTCCTTCGGGCAAACAGAAGAGGCGTGGAGACCAGGAGCGTCCATG 1917
Query 1920 GGCATTGCTATAATATTCATAGGTGGCAGAGACGACCGAGAGGCACTAGCCTTCGCTGCA 1979
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1918 GACATTGCTATAATATTCATAGGTGGCAGAGACGACCGAGAGGCACTAGCTTTCGCAGCA 1977
Query 1980 CAAGTGGCTCGACATCCTGCTGTGAAATTAAAGGTTATACGTTTCTTGGAAGACAAGAGC 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 CAAGTGGCTCGACATCCTGCTGTGAAATTAAAGGTTATACGTTTCTTGGAAGACAAGAGC 2037
Query 2040 TCTCAAAACGCACAAAAACGAAGCAGCATCCTGAACAGAGCGAGTGTGGTAGATCAAGAG 2099
|| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2038 TCGCAGAACGCACAAAAACGAAGCAGTATCCTGAACAGAGCGAGTGTGGTAGAGCAAGAG 2097
Query 2100 GAGGAAATGAAGCTTGATGATGAATGTTTTGCTGAGTTCTACGAAAGATACATAGCTGGA 2159
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 2098 GAGGAAATGAAGCTTGATGATGAATGTTTTGCTGAGTTTTATGAAAGATACATAGCTGGA 2157
Query 2160 GGTGGAAGAGTGTCTTACATGGAGAAGCATCTCACCAACTCCTCTGAGACTTTCACAGCT 2219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 GGTGGAAGAGTGTCTTACATGGAGAAGCATCTCACCAACTCCTCTGAGACTTTCACAGCA 2217
Query 2220 CTTAAATCACTAGATGGAGAGTATGGGCTGGTGATTGTAGGAAGAGGAGGGGGAAGAGCG 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 CTTAAATCACTAGATGGAGAGTATGGGCTGGTGATTGTAGGAAGAGGAGGGGGAAGAGCG 2277
Query 2280 AGCAGTGGGTTAACCACCGGCCTCAACGACTGGCAGCAATGTCCAGAGCTTGGTCCCATA 2339
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 AGCAGTGGGTTAACCACTGGCCTCAACGACTGGCAGCAATGTCCAGAGCTTGGTCCCATA 2337
Query 2340 GGTGACGTTCTTTCAGGATCAGATTTCTCACACAACACATCAATGTTAATTATTCAGCAG 2399
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2338 GGTGACGTTCTTTCTGGATCAGATTTCTCACACAACACATCGATGTTAATCATTCAGCAG 2397
Query 2400 CAGCGTACTCGGGGTCAGCTAGAAGGGCTTCATGATGACTTCACTATACTGTGAATATCT 2459
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 2398 CAGCGCACTCGGGGTCAGCTAGAAGGGCTTCATGATGATTTCACCATCCTGTGAATATCT 2457
Query 2460 GTACAAATGCACTTTACTTAGTAGCTTGGGAAGAGTAGTAGCTTCACCATCACAACTCTT 2519
|||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2458 GTACAAATGCACTT-ACTTAGTAGCTTGGGAAGAGTAGTAGCTTCACCATCGCAGCTCTT 2516
Query 2520 AAA-GAGACTTTGTACAATAGTTCAAACATTAAGCGGTTTATG 2561
||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 2517 AAAAGAGAATTTGTACAATAGTTCAAACATTAAGTGGTTTATG 2559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96558771075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5