BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52090.2
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938082 jgi|Araly1|938082|scaffold_502273.1 462 1e-129
> Ahg938082 jgi|Araly1|938082|scaffold_502273.1
Length=609
Score = 462 bits (250), Expect = 1e-129
Identities = 299/322 (93%), Gaps = 6/322 (2%)
Strand=Plus/Plus
Query 438 ATTCACACAACAAGCCAGTCTTCCCCAATGCAAGCATACAACCAGGCCATCAATGACTTG 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 291 ATTCACACAACAAGCCAGTCTTCCCCAATGCAAGCATACAACCAGGCCATCAATGATTTG 350
Query 498 GACAAGGAGCTCGACTACTTGAAGAACCAGTTTGAGGCAGAGGTGGCCAAGTTTTCGAAT 557
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 351 GACAAGGAGCTCGATTATTTGAAGAACCAGTTTGAGGCAGAGGTGGCCAAGTTTTCAAAT 410
Query 558 CAGTTTTAAGGAACTTGGAGTTCTCCATCAGCACATCGGGGAAAACGTTTTACATTGTCT 617
||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 411 CAGTTTTAAGGAA---GGAGTCCTCCATCAGCACATCGGGAAAAACGTTTTACATTGTCT 467
Query 618 TTTGCTAAGCACCAATCA-AGA-CTAATAATGAGCTTGGGAAATTTTCCCTAGTTATGCT 675
|| |||||||||||| || || || |||||||||||| ||||||||||| |||||||||
Sbjct 468 TTCGCTAAGCACCAACCACAGGGCTTATAATGAGCTTGTGAAATTTTCCCCAGTTATGCT 527
Query 676 TTGTATAAATCAAAAACAAATCGGCCTGTAACTTCTTTTAACTCT-ATGTTTCAACACCA 734
|||||||||||| |||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct 528 TTGTATAAATCAGAAACAAATCGCCCTGTAACTTGTTTTCACTCTTATGTTTCAACACCA 587
Query 735 TTTCAGGATGCTATGAAGTAAT 756
||| ||||||||||||||||||
Sbjct 588 TTTGAGGATGCTATGAAGTAAT 609
Score = 453 bits (245), Expect = 9e-127
Identities = 276/291 (95%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 58 ACTGAAGA-ACTCTTGACTGTCTCTCTGCGGCGAAAAAGAGAGCGAAGCTTGAAATCTCC 116
|||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTGAAGAGCCCCTTGAGTGTCT-TCTGCGGCGAAAAAGAGAGCGAAGCTTGAAATCTCC 59
Query 117 GATTAAGCCATGAATGCTCCCGAACGATATGAGCGATTCGTCGTCCCTGAAGGCACCAAG 176
|||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 60 GATTAAGCCATGAATGCTCCAGACCGATACGAGCGATTCGTCGTCCCTGAAGGAACCAAG 119
Query 177 AAGGTTTCTTATGATAGGGATACGAAGATCATCAATGCTGCTTCCTTCACGGTTGAGAGA 236
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 AAGGTTTCTTATGATAGGGATACGAAGATCATCAATGCTGCTTCCTTCACGATTGAGAGA 179
Query 237 GAAGACCATACGATTGGAAACATTGTCCGCATGCAACTTCATCGCGACGAGAATGTCTTG 296
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 180 GAAGACCATACGATTGGAAACATTGTTCGCATGCAACTTCACCGTGACGAGAATGTCTTG 239
Query 297 TTTGCTGGATACCAACTTCCTCATCCTCTTAAGTACAAAATCATAGTGAGG 347
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 240 TTTGCTGGATATCAACTTCCTCATCCTCTCAAGTACAAAATCATAGTGAGG 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5