BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52100.1
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348307 jgi|Araly1|348307|fgenesh1_pg.C_scaffold_5001699 2654 0.0
> Ahg348307 jgi|Araly1|348307|fgenesh1_pg.C_scaffold_5001699
Length=2037
Score = 2654 bits (1437), Expect = 0.0
Identities = 1591/1667 (95%), Gaps = 4/1667 (0%)
Strand=Plus/Plus
Query 427 GTTTCAGTCAAAGACCTCAATGAAGAAGATCATGATCATCACAGTGCAAGCATAACATGT 486
||||| |||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||
Sbjct 373 GTTTCTGTCAAAGAGCTCAATGGAGATGATCATGATCATCACAGTTCAAGCATAACATGT 432
Query 487 CACATGTGCTATTTGGTTGAAGTTGGGAAGAGTGAGAGAGCCAAGATGCTTTCTTGCAAA 546
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 433 CACATGTGCTATTTGGTTGAAGTTGGGAAAAGTGAGAGAGCTAAAATGCTTTCTTGCAAA 492
Query 547 TGTTGTGGGAAGAAGTATCATAGAAACTGCGTGAAGTCTTGGGCCCAACATAGAGATCTT 606
| |||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 493 TCTTGTGGCAAGAAGTATCACAGAAACTGCTTGAAGTCTTGGGCTCAACATAGAGATCTG 552
Query 607 TTTAATTGGAGCTCTTGGGCGTGCCCATCTTGCCGAATCTGTGAGGGCTGCGGGACTTTA 666
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 553 TTTAATTGGAGCTCTTGGGCGTGCCCCTCTTGCCGAATCTGTGAGGGCTGCGGGACTTTA 612
Query 667 GGGGATCCAAAAAAGTTTATGTTCTGCAAAAGATGTGATGATGCATATCATTGTGATTGC 726
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GGAGATCCAAAGAAGTTTATGTTCTGCAAAAGATGTGATGATGCATATCATTGTGATTGC 672
Query 727 CAACATCCTCGGCACAAGAATGTTAGTTCTGGACCCTATTTGTGTCCTAAGCACACCAAA 786
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 673 CAACAACCTCGGCACAAGAATGTTAGTTCTGGACCCTATCTGTGTCCTAAGCACACCAAA 732
Query 787 TGTTACAGTTGTGAGTCTACAGTCCCTGGGAATGGCCAGAGCTTACGGTGGTTTTTGGGG 846
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TGTTACAGCTGTGGGTCTACAGTCCCTGGGAATGGCCAGAGCTTACGGTGGTTTTTGGGG 792
Query 847 CATACTTGTTGTGATGCTTGTGGAAGGTTGTTTGTTAAGGGGAATTATTGTCCTGTATGT 906
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 793 CATACTTGTTGTGATGCTTGTGGAAGGTTGTTTGTTAAGGGAAATTATTGTCCTGTATGT 852
Query 907 TTGAAGGTTTACAGGGACTCGGAAGCAACGCCAATGGTGTGTTGTGACTTTTGCCAGCGC 966
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 853 TTGAAGGTTTACAGGGACTCAGAAGCAACACCAATGGTGTGTTGTGACTTTTGCCAGCGC 912
Query 967 TGGGTTCATTGCCAGTGTGATGGAATTAGCGATGAGAAATATATGCAGTTTCAAGTGGAT 1026
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TGGGTTCATTGCCACTGTGATGGAATTAGCGATGAGAAATATATGCAGTTTCAAGTGGAT 972
Query 1027 GGGAATCTTCAATACAAATGTTCTACTTGTCGTGGGGAATCCTACCAGGTCAAGGATCTT 1086
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 973 GGGAATCTTCAATACAAATGTTCTACTTGTCGTGGGGAATGCTACCAGGTCAAGGATCTT 1032
Query 1087 GAAGATGCTGTACAAGAAATTTGGAAGCGAAAAGATATGGCTGATAAAGATCTAATTGCT 1146
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1033 GAGGATGCTGTACAAGAAATTTGGAAGCGAAAAGATATAGCTGATAAAGAGCTAATTGCC 1092
Query 1147 AGCTTGAAAGCTAGTGCTCGGGTTGTTGGGCAAACTGGTGGTGCCCCTCTTATGAATCAG 1206
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1093 AGCCTGAAAGCTAGTGCTCGGGTTGTTGGGCAAACTGGTGGTGCCCTTCTTGTGAATCAG 1152
Query 1207 CCTGGCTCTGTGGAAAGAAAAGTTTCTGAAAAGGCTATGGTCAATGGTGAAGAAGAGAAG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CCTGGCTCTGTGGAAAGAAAAGTTTCTGAAAAGGCTATGGTCAATGGTGAAGAAGAGAAG 1212
Query 1267 CCATTGAGAGTTCTCAGGATAAAAAGTAGCAGGCCTCAAGATTCAGATAGTGAGAAATTT 1326
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1213 CCATTGAGAGTTCTCAGGATAAAAAGTAGCAGGACTCAAGATTCAGATAGTGAGAAATTT 1272
Query 1327 GGAAAACACGCTACAGAGCTGAGCACTGTGAAGGCGAAAAAGTTGGTGATAAGTATAGGT 1386
|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1273 GGAAAACACGGTACAGAGCTGAACACTGTGAAGGCGAAAAAATTGGTGATAAGTATAGGT 1332
Query 1387 CCTCGAAAGACAGGGGTTACAAACTCTACGAGCTGCGATGTATCAAAGACTG-CCTCCAA 1445
||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1333 CCTCGAAAGACGGGGGTTACAAACTCTACGAGCTGCGATGTATCAAAG-CTTACCTCCAA 1391
Query 1446 ATCAAATGGAAAGCAAGAAAAATTGCAAGCAGAGGAAACGTTTTCCCGGGAAGAGCGTCG 1505
||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||
Sbjct 1392 ATCCAATGGAAAGCAAGAAAAATTGCAATCAGAGGAAACGTTTTCCCGAGAACAGCATCG 1451
Query 1506 CAGCTTGCTGGGAAAGAATAGTGACGAAAAGAGAGGGTCTCGAGGTGAAGTAACTACTTT 1565
|||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1452 CAGCTTGCTGGGGAAGAATAGTGACGAAAAGAGAGGGTCTCGAGGTGAAGTAGCCACTTC 1511
Query 1566 AAAGGCTGAGGGCGGATTCATAGGGAGACACTCAGATGGTAAAGGAGATTTAAATAGTGG 1625
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1512 AAAGGCTGAGGGAGGAATCATAGGAAGACACTCAGATGGTAAAGGAGATTTAAATAGTGG 1571
Query 1626 CTCGCATGATTCATCGCAGAAAGATTCAAGGCGATTGTTGAAA-TTGAAAATaaaaaaaC 1684
|||||||||||||| |||||||||||||||| ||||| ||||| || | |||||||||||
Sbjct 1572 CTCGCATGATTCATTGCAGAAAGATTCAAGGAGATTGCTGAAACTT-AGAATAAAAAAAC 1630
Query 1685 ATAATCCCGAGGGCCAAGAAAGTGAAGCCCCTAGCATTGTATATGAAAGAAGTAAATCTG 1744
||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1631 ATAATCCTGAGAGCCAAGAAGGTGAAGCCCCTAGCATTGTATATGAAAGAGGTAAATCTG 1690
Query 1745 GTAAAGGACATAGGTCAAAGAGGAAAAGAGCATCACCTCCAGCTGAGAAGTCAGCGTTCA 1804
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1691 GTAAAGGACATAGGTCTAAGAGGAAAAGAGCATCACCTCCAGCTGAAAAGTCAGCGTTCA 1750
Query 1805 ATGAAGATGAAGATGTATCGCTGTCACGAGAAGACAGTTTGTTAGACGAAATGCTTGACG 1864
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1751 ATGAAGATGAAGATGTATCGCTGTCCCGTGAAGACAGTTTGTTAGACGAAATGCTTGATG 1810
Query 1865 CTAGTTGGATTCTGAAGAAGTTGGGGAAAGATGCGAAAGGaaaaaaaGTTCAAATACACG 1924
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1811 CTAGTTGGATTCTGAAGAAGTTGGGGAAAGATGCGAAAGGAAAAAAGGTTCAAATACACG 1870
Query 1925 AGGCCTCGGATGATTCATGGGAGAAAGGAGTTGTAAGTGAAGTAGGAGGAGCTGGAGGCA 1984
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 1871 AGGCCTCGGATGATTCATGGGAGAAAGGAGTGGTAAGTGAAGTAGGAGGAGGAGGGGGCA 1930
Query 1985 CCTCGAAGTTGATGGTGACGCTAGAGAATGGAAAAGTGAAGACGGTCGAGCTCGGGAAGC 2044
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1931 CATCGAAGTTGATGGTGACGCTAGAGAATGGAAAAGTGAAGACGGTCGAGCTCGGAAAGC 1990
Query 2045 AAGGGGTTCGATTTGTTCCTCAGAAACAAAAGAGAACGAGAACGTGA 2091
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1991 AAGGGGTTCGATTTGTTCCTCAGAAGCAAAAGAGAACGAGAACGTGA 2037
Score = 549 bits (297), Expect = 3e-155
Identities = 355/383 (93%), Gaps = 4/383 (1%)
Strand=Plus/Plus
Query 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATGCCGGAAAATTTGCTTCTGCGTTTTGGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATGCCGGAAAATTTGCTTCTGCGTTTTGGGG 60
Query 61 TTTTCTCGGAATCTTCATGGTAATGAAGTCAAGGATGTGTATCTCAAA-GAGATCCATTC 119
||| ||||||||||||||||||| |||||||||||||||| |||||| | |||||||||
Sbjct 61 TTTCCTCGGAATCTTCATGGTAAAGAAGTCAAGGATGTGTTTCTCAACCG-GATCCATTC 119
Query 120 TCTTCAGGAGTTCGTGCGAAACCCCTGGGATGCTGAGGTTTCCAAGGACGGTACCGTTCA 179
|||| | |||| | ||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 120 TCTTGAAGAGTGCTTGCTAAATCCCTGGAATGCTGAGGTTTCCAAGGACGGTACCGTTCA 179
Query 180 GATCCATGTGCCTAAGCTTGCTGTTTTCGATACTGGTCCTCGCATTGCGGCTAGAAATGT 239
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GATCCATGTGCCTAAGCTCGCTGTTTTCGATACGGGTCCTCGCATTGCGGCTAGAAATGT 239
Query 240 TGGTGTTGGGAGTGATTCGGCGATGGAGGTTGTTGCTGCATCATCGAATTTGGTACCAGC 299
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGTATTGGGAGTGATTCTGCGATGGAGGTTGTTGCTGCATCATCGAATTTGGTACCAGC 299
Query 300 TAAACGCACCTTGGTGTTGCAGAAGAAGGCT-GTGGAAGTTTATGCTGCGAATGATTGTT 358
|||||| || |||||||||||||||||| | ||||||| |||||||| | ||||| |||
Sbjct 300 TAAACGGACGGTGGTGTTGCAGAAGAAGG-TAGTGGAAGATTATGCTGTGGATGATGGTT 358
Query 359 CTGGCGACTTAGAGGAATCTGTC 381
||||||||||||||| ||||||
Sbjct 359 CTGGCGACTTAGAGGTTTCTGTC 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78656355925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5