BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52105.1

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938084 jgi|Araly1|938084|scaffold_502275.1                        414    2e-115
  Ahg485571 jgi|Araly1|485571|fgenesh2_kg.5__1563__AT3G52110.1         104    6e-22 


> Ahg938084 jgi|Araly1|938084|scaffold_502275.1
Length=263

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 253/266 (95%), Gaps = 6/266 (2%)
 Strand=Plus/Plus

Query  34   aaaaaaaaaaacagagagaggaaaaaaaaaTGTTGCAGCTGTTTTTCACGATAGCGTTCT  93
            ||||||||||| | ||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct  1    AAAAAAAAAAA-ACAGAGA-GAAGAAAAAATGTTACAGCTGTTTTTCACGATAGCGTTCT  58

Query  94   CGGCGGCGCCGTTAACGTTGTACATACCGCCGATAAGATGTTTGACGGTGTTTGTGGAGA  153
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  59   CGGCGGCGCCGTTAACGTTGTACATACCGCCGATTAGATGTTTGACGGTGTTTGTGGAGA  118

Query  154  CGATGGAGGAGATGGGAATGGAAGGTAGGGTTTATAGCTGGAGACTTTTTCCTCGAGCCA  213
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  119  CGATGGAGGAGATGGGAATGGAAGGTAGGGTTTATAGCCGGAGACTTTTTCCTCGAGCGA  178

Query  214  GAATTGCTTGGTCAAGGCTTCTCGATTGcttcttctcctcttcacgtcctc-tctct-t-  270
            ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | 
Sbjct  179  GAATTGCTTGGTCTAGGCTTCTCGATTGCTTCTTCTCCTCTTCACGTCCTCCTCTCTCTT  238

Query  271  cttaaaaattatgttcgtctttcttc  296
            ||||||| ||||||||||||||||||
Sbjct  239  CTTAAAA-TTATGTTCGTCTTTCTTC  263


> Ahg485571 jgi|Araly1|485571|fgenesh2_kg.5__1563__AT3G52110.1
Length=1275

 Score =  104 bits (56),  Expect = 6e-22
 Identities = 56/56 (100%), Gaps = 0/56 (0%)
 Strand=Plus/Minus

Query  441   AAACAAATCGTTGTATGTGTAAAAGTAAGAGATTGAATCAAATTTGCCCAGAATTA  496
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1275  AAACAAATCGTTGTATGTGTAAAAGTAAGAGATTGAATCAAATTTGCCCAGAATTA  1220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18009438008


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5