BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52110.1
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485571 jgi|Araly1|485571|fgenesh2_kg.5__1563__AT3G52110.1 2039 0.0
> Ahg485571 jgi|Araly1|485571|fgenesh2_kg.5__1563__AT3G52110.1
Length=1275
Score = 2039 bits (1104), Expect = 0.0
Identities = 1222/1278 (96%), Gaps = 11/1278 (1%)
Strand=Plus/Plus
Query 9 TCTCTGTATCTCTGTGTATTCTTCTCTCATGGAGCCTGCTCATATCGATTGGAAGAGAAT 68
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTGTGTATTCTTCTCTAATGGAGCCTGCTCATATCGATTGGAAGAGAAT 60
Query 69 CGATTCTCGTTTTGTTGAAGACGTTTTTTACGAACACATCAGAGCTCCTAAATGGTTCGA 128
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CGATTCTCGTTTTGTTGAAGACGTTTTCTACGAACACATCAGAGCTCCTAAATGGTTCGA 120
Query 129 TTTCTTGGCCCCTACCCATTTTGACTCCATTGACGACGATGCTTGGTTCTGCAAACCTGA 188
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCTTGGCCCCTACCCAATTTGACTCCATTGACGACGATGCTTGGTTCTGCAAACCTGA 180
Query 189 ATGTAATCATCCCAAGAGACCTGAGGACTTTTTCTCAACGCCGACTTCTTCCAAGCATCC 248
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 181 ATGTAATCATCCCAAGAGACCTGAGGACTTCTTCTCAACGCCAACTTCTTCCAAGCATCC 240
Query 249 AAGTCTGAGGGATACGAATGAGACTCTAACAGAGCAGAATCAGAGGAGGAGGGGATATGC 308
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 AAGTCTGAGGGATACGAATGAGACTCTAACAGAACAGAATCAGAGGAGGAGGGGATATGC 300
Query 309 TTTATCACCTTCTACTCCAAACAACCAAGAAAGTGAAAATCAGAACCCGAACTTAGCCAC 368
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 301 TTTATCACCTTCTACTCCAAACAACCAAGAAAGTGAAAACCAGAATCCAAACTTAGCCAC 360
Query 369 ACCTCCAAGCTACCAAGCAAAATCATGGAGAGCAGCAATTAAATCAACTTCTGTCAAGAA 428
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 ACCTCCAAGCTACCAAGCAAAATCCTGGAGAGCAGCAATTAAATCAACTTCTGTCAAGAA 420
Query 429 GATGAATAAAGAAGTTCCAAGACTAAAGAGCACACAATCAGCTAGAAATCTGTTTTCAGG 488
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GATGAATAAAGAAGCACCAAGACTAAAGAGCACACAATCAGCTAGAAATCTGTTTTCCGG 480
Query 489 GAGAGACATATTTGGTCATATCTCAGATTTCTGCTATGAATTGAAGAGATTAGCCACAAG 548
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 GAGAGACATATTTGGTCATATCTCAGATTTCTGCTATGAGTTGAAGAGATTAGCCACAAG 540
Query 549 GGTTACTGAGAGAGAAGATACTGGGAAATCTGAAGTGAAGGAGAGTCATCAAGTGGGTGA 608
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 GGTGACTGAGAGAGAAGATACTGGGAAGTCTGAAGTGAAGGAGAGTCATCAAGTGGGTGG 600
Query 609 AATAGTAAATCAGCCTTACTCTGTTCATGACTTGGAATTGAAAAAGGAAAGAAAGCCACT 668
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 ATTAATAAATCAGCCTTACTCTGTTCATGACTTGGAATTGAAAAAGGAAAGAAAGCCATT 660
Query 669 GCTTGAAGTAAGCAAAGATAAGCTCCCTGAGTCCACGGATGTTAAAGGAAGCACATTTAA 728
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 661 GCTTGAAGTAAGCAAAGATAAGCTCCCTGAGTCCACGGATGTTAAAGGAAGTACCTTCAA 720
Query 729 AGAGAACCGTAGAAGAAAGAAGAGAGTGGATGATGCAGAGAACATTCCTGTCTCACTTAA 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 AGAGAACCGTAGAAGAAAGAAGAGAGTGGATGATGCAGAGAACATTCCTGTCTCTGTTAA 780
Query 789 TGTGGAGACTGTAAAAAACAAAGGAGAGGAGGGTAGAAGAAAGAAGAGAATGGATGATGC 848
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTGGAGACTGTAAAGAACAAAGGAGAGGAGGGTAGAAGAAAGAAGAGAATGGATGATGC 840
Query 849 AGAGAACATCCCAGTTCCTCTAAAACTGGAGACTATAAAGAACAAAGGACACGAACGATT 908
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 AGAGAACATCCCTGTTCCTCTAAAACTGGAGACTGTAAAGAACAAAGGACACGAACGATT 900
Query 909 CCTGCAGCAAATCAGGACAAACCCACCATCTCCTCAATGCTTCTCTGAGAACCGGACAGC 968
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 901 CCTGCAGCAAATCAGGACAAATCCACCATCTCCTCAATGCTTCTCAGAGAACAGGACAGC 960
Query 969 TACATTGAAACCCTTGAGGACCAAACCTACGgaagtgttgaagagaaaggaagatgaagc 1028
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 TACATTGAAACCCTTGAGGACCAAACCTACGGAAGTATTGAAGAGAAAGGAAGATGAAGC 1020
Query 1029 tgaagaagaaaagaacagaaagagtggagaaagcaaagaagcaacaagGGGATTGGACGT 1088
|||||||| |||| ||| |||||||||||| ||||||||| || |||| ||||||||
Sbjct 1021 AGAAGAAGAGAAGATCAGGAAGAGTGGAGAAGGCAAAGAAGGAA---GGGGCTTGGACGT 1077
Query 1089 TCTCTGGTTCTTAAAGCCTTGCACTTTAGCCAACTAGAA-AA-C-CT---T--CACCAAA 1140
|||||||||||||||||||||||||||||||||||| || || | || | |||||||
Sbjct 1078 TCTCTGGTTCTTAAAGCCTTGCACTTTAGCCAACTAAAAGAAGCTCTAAATTTCACCAAA 1137
Query 1141 TTCTTTCTATATTGATTCATTCTTTTGTTAATTTCATTTTATTCAACTGTAACTAACGAG 1200
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 TTCTTTCTATATTGATTCATTCTTTTGTTAATTTCATTTTATTCAACTCTAACTAACGAG 1197
Query 1201 ATGATTATCTTGCTCAGATATATAATTCTGGGCAAATTTGATTCAATCTCTTACTTTTAC 1260
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATGATGATCTTGCTCAGAGATATAATTCTGGGCAAATTTGATTCAATCTCTTACTTTTAC 1257
Query 1261 ACATACAACGATTTGTTT 1278
||||||||||||||||||
Sbjct 1258 ACATACAACGATTTGTTT 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47768015001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5