BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52115.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323761 jgi|Araly1|323761|fgenesh1_pm.C_scaffold_5001305 2350 0.0
> Ahg323761 jgi|Araly1|323761|fgenesh1_pm.C_scaffold_5001305
Length=3345
Score = 2350 bits (1272), Expect = 0.0
Identities = 1646/1815 (91%), Gaps = 72/1815 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGATGAAACTGTTGACGGTATCGAAGCCAAGTATATATCTGGTCTCAGTACTATA 60
||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 1 ATGGGAGATGAAACTTTTGATGGTATCGAAGCCAAGTACATTTCTGGTCTCAGTACCATA 60
Query 61 ATGGTTGCTACAATTCAAGAAGCCAAGGATAGAATTTCTCAGATCGAGTATATTTTTTGT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ATGGTTGCTACAATTCAAGAAGCCAAGGATCGAATTTCTCAGATCGAGTATATTTTTTGT 120
Query 121 AGCCAGTTATTTCCAAATTTTCAATCCAAATCCAAAGCTTTTGAAAAAGTTTATTCAGAA 180
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 121 AGCCAGTTATTCCCAAATTTTCAATCCAAATTTAAAGCTTTTGAAAAAGTTAATTCAGAG 180
Query 181 GCTCGTCTTGCTGCTTGTGATACTTGGAAAGATAGAGAGAAAAGTTTGTTAGATCAGATT 240
||||||||||||||||||||| |||||||||| |||||||||| |||| || |||||||
Sbjct 181 GCTCGTCTTGCTGCTTGTGATGCTTGGAAAGAGAGAGAGAAAAATTTGGTATCTCAGATT 240
Query 241 GAAGAGCTTAAGGTAGAGAAT---C-----AA--C--AG-AT-T--AA--G-TC-AG-AT 279
|| ||||||||| |||||||| | || | || || | || | || || ||
Sbjct 241 GAGGAGCTTAAGTTAGAGAATCAACAGATTAAGTCTGAGAATGTGGAATTGATCAAGAAT 300
Query 280 AAGGAGAAGTTAGCTGAAGAACTTGGTAAAACTGCTTCTATGCCTCTTAGATTGACGAGT 339
||||||||| |||||||| |||||| || |||||||||||||||||||||| ||||||||
Sbjct 301 AAGGAGAAGCTAGCTGAACAACTTGATAGAACTGCTTCTATGCCTCTTAGACTGACGAGT 360
Query 340 CTACAAGGCTACATCGATCATTTGAAAAAGAAGATGAAGAGTAGATCTAAGATGGTTGGT 399
||||||| |||||| | |||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 361 CTACAAGACTACATTGCTCATTTGAAAAAGAAGCTCAAGAGTAGATCTAAGATGGTTAGT 420
Query 400 GATGCAAGAGATTTGTATTATAGGTTAGTTGAGTTGTTGCAGGTTAAGGGTTTGGATGAG 459
||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 421 GATGCAAGAGAGTTGTATTATAGGTTAGTTCAGTTGTTACAGGTTAAGGGTTCGGATGAG 480
Query 460 CTTAGCGAAGATGGGATAAATATGATTGTTTCGGAAGTGAAGAGCCTTAAGATGAAGACT 519
||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 481 CTTAGCGAAGATGGGATTAATATGATTCTTTCGGAAGTGAAGAGCCTTAAGGTGAAGCCT 540
Query 520 GAATTTCTTCAGGAGGAACTCTCAAAGAAGACATTGGTGACGGAGAATCTGCTGAAGAAA 579
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 541 GAATTTCTTCAGGAGGAACTTTCAAAGAAGACATTGGTAACGGAGAATCTGCTGAAGAAA 600
Query 580 CTGGAGTACTTGTCTACAGAAGCTGCAGATGGTGAAAGGAAGTTGAGCAGCGTTGAAGAA 639
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CTGGAGTATTTGTCTACAGAAGCTGCGGATGGTGAAAGGAAGTTGAGCAGCGTTGAAGAA 660
Query 640 GAGAAACAAAGATTGAAGACTAGGTTGCAGGTTTTTGAGGAGAATGTCGGTAGACTTGAA 699
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGAAACAAAAATTGAAGACTAGGTTGCAGGTTTTTGAGGAGAATGTCGGTAGACTTGAA 720
Query 700 GAGATACTTAGGCAAAAGACCGATGAGGTTGAGGAAGGAAAGACAGCTCTTGAGGTTTTG 759
||||| || ||||| |||| ||||||| ||||||||||| |||| |||||||||||||||
Sbjct 721 GAGATGCTCAGGCAGAAGAACGATGAGCTTGAGGAAGGACAGACGGCTCTTGAGGTTTTG 780
Query 760 CAGGGTAAACTCAAATTGACCGAGAGGGAAATGTTGAATTGTAAACAAAAGATTGCAGAT 819
|||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 781 CAGGGTAAACTCAACTTGACAGAGAGGGAAATGTTGGAGTGTAAACAAAAGATTGCAGAT 840
Query 820 CATGAGAAAGAAAAGACAGTGGTTATGGGAAAAGCAAAGGA---T--G---AT-ATGCAG 870
|||||||||||||||||||||||||||||||||||||||| | | || ||||||
Sbjct 841 TATGAGAAAGAAAAGACAGTGGTTATGGGAAAAGCAAAGGACGATATGCCTATGATGCAG 900
Query 871 GGCAGACACGGAAGCTACTTGGCTGACTTAGAAGCTTTACGTTGCCAGAGTGAAGAGAAA 930
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 901 GGCAGACACGGAAGCTACTTGGCTGACTTAGAAGCTTTATGTTGCCAGAGTGAAGAGAAA 960
Query 931 TCATTTGAGTTAGCTATGGAGATAAAGAAAA-ATAAAGAACTCTCTCGTACTTGCAAAAA 989
||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||
Sbjct 961 TCATTTGAGTTAGCTATGGAGATAAAGAAAAGA-AAAGAACTCTATAGTACTTGCAAAAA 1019
Query 990 G-TGGAAGTCCCAACATACTTTTCTCTGCAAAAGGTTTAATTTTACTCCTGACAGTGTTC 1048
| || ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 GCTG-AAGTCCCAATATAATTTTCTCTGCAAAAGGTTTGGTTTTACTCCTGACAGTGTTC 1078
Query 1049 TTCACCAAAGCAGCCTTGAGGATGAGAATAAAGAAATTGGTCAGCATGAGAAATCAGCAA 1108
|||||||||||||||||||||| || | | | | || || ||||||
Sbjct 1079 TTCACCAAAGCAGCCTTGAGGAC-----TACC----T----C-G-A-GA-AAC-CAGCAA 1120
Query 1109 TCTCGAGTTATCTTGAAAGGAAACACTCAGAAACTGCTGAAGGAGCAGACAAAGTGAGAA 1168
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TCTCGAGTTTTCTTGAAAAGAAACACTCAGAAACTGCTGAAGGAGCAGACAAAGTGAGAA 1180
Query 1169 TTGGT-ACTGGCTCGAGTGGCAACAACTATGAGAAAGAGAGTATAATCAAAACAGTGCAG 1227
||||| | |||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1181 TTGGTGA-TGGCTCGAGTGGCAACAACTGCGAGAAAGAGAGGATAATCAAAACGGTGCAG 1239
Query 1228 ACACCTATCACTTCCATCTCACCAATTGTGCGGTCACCTGGTG-C-----TG-C------ 1274
|||||||||||||||||||||||||||||||| | |||||||| | || |
Sbjct 1240 ACACCTATCACTTCCATCTCACCAATTGTGCGATTACCTGGTGTCAGAAGTGACCCCTCT 1299
Query 1275 -----AAAACCTCCACAGCTAAGCGGATTAAAGCGTCCAGCTTCCATTTGGAGAGACACA 1329
|||| |||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 1300 GCTGCAAAATCTCCACAGCTGAGTGGATCAAAGCGTCCAGCTTCCATTTGGAGAGACACA 1359
Query 1330 AGATCTCGTCAATCTCCTGGAGGACATGATCCTCATGATGATTTTCTAGATACTCCCATT 1389
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1360 AGGTCTCGCCAATCTCCTGGAGGCCATGATCCTCATGATGATTTTCTAGATACTCCCATT 1419
Query 1390 GAGAATGTCAAAAGGGTCGCTGGGGAAGAAAAACATGTTCATGATGTTGCTAAGAAAGAT 1449
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1420 GAGAATGTCAAAAGGGTCGCTGGGGAAGAAAAACATGTTCATAATGTTGCTAAGAAAGAT 1479
Query 1450 GATTCAGACGACGAGACACAGGACATGAATCCTAAACCGAGTCCATCACGACAGCGAATT 1509
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1480 GATTCAGACGATGAGACACAGGACATGAATCCTAAACCGAGTCCATCAAGGCAGCGAATT 1539
Query 1510 CAAATTGCAGAAACGAGTAAAAAGAGTTTCAAGCATGTGGAGTCAGTGAGGAAAAAAGCC 1569
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1540 CAAGTTGTAGAAACGAGTAAAAAAAGTTTCAAGCATGTGGAGTCAGTGAGGAAAAAAGCT 1599
Query 1570 GAGAGGGAGAATTTGAAAGGTATAGAATGTAAACAATGCAAGAAATTCTATGATGCTGTT 1629
|||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||
Sbjct 1600 GAGAGGGAGAATTTGAAAGGGATAGAGTGTAAGCAGTGCAAGAAATTCTATGATGCTGTA 1659
Query 1630 CATCCTGAGAATGAAGGAAATGGTAACAAAAGCTTGAGATGTGAACATCATGAAGGTGTG 1689
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1660 CATCCTGAGAATGAAGGAAATGGTAACAAAAGCTTGAGATGTGAGCATCATGAAGGTGTG 1719
Query 1690 TCGAGGCATCGTTACAGATACGCTCCTCCAATGACTCCTGAAGGGTTTTGGAACATCGGG 1749
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1720 TCGAGGCATCGTTATAGATACGCTCCTCCAATGACTCCTGAAGGATTTTGGAACATCGGG 1779
Query 1750 TTTGAATCCGAAATG 1764
|||||||||||||||
Sbjct 1780 TTTGAATCCGAAATG 1794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5