BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52130.1

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938088 jgi|Araly1|938088|scaffold_502279.1                        603    5e-172


> Ahg938088 jgi|Araly1|938088|scaffold_502279.1
Length=415

 Score =  603 bits (326),  Expect = 5e-172
 Identities = 385/414 (93%), Gaps = 2/414 (0%)
 Strand=Plus/Plus

Query  1    ACCATCGCTGTTTACATGATGATGAAAGCTATGAGAGTTGGGTTGGCAATGACGCTGCTC  60
            |||||| ||||||||| |||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct  3    ACCATCACTGTTTACACGATGATGAAAACTATGGGAGTTCGGCTGGCAATGGCGCTGCTC  62

Query  61   ATGACCATAACCGTTCTTACCATTGTTGCAGCGCAGCAAG-AGGGCCTGCAACAACCACC  119
            |||| |||||| ||||||||||||||   ||||||||||| | | |||||||||||||||
Sbjct  63   ATGATCATAACTGTTCTTACCATTGTCATAGCGCAGCAAGCA-GACCTGCAACAACCACC  121

Query  120  TCCACCACCAATGTTGCCCGAGGAGGAAGTGGGAGGATGCAGCAGGACATTTTTCTCCGC  179
            ||| ||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct  122  TCCCCCACCGATGTTGCCCGAGGAGGAAGTGGGAGGATGCAGTAGAACATTCTTCTCCGC  181

Query  180  GCTGGTACAGCTCATACCATGTAGAGCAGCAGTTGCTCCTTTTAGCCCGATCCCACCGAC  239
            |||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  182  GCTGGTGCAGCTGATACCATGTAGAGCAGCAGTAGCTCCTTTCAGCCCGATCCCACCGAC  241

Query  240  CGAGATATGTTGCTCTGCCGTTGTCACACTTGGTCGTCCTTGTCTTTGCCTCCTTGCCAA  299
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  CGAGATGTGTTGCTCTGCCGTTGTCACACTTGGTCGTCCTTGTCTTTGCCTCCTTGCCAA  301

Query  300  TGGACCTCCACTCTCTGGCATTGACCGCTCCATGGCTCTTCAGCTCCCTCAGAGATGCTC  359
            ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  302  TGGACCTCCACTCTCCGGCATTGACCGCTCCATGGCCCTTCAGCTTCCTCAGAGATGCTC  361

Query  360  TGCTAATTTCCCTCCCTGCGATATCATCAACTAGGAAGGACATATCAtctttct  413
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  362  TGCTAATTTCCCTCCCTGCGATGTCATCAACTAGGAAGGACATATCATCTTTCT  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19764595102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5