BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52150.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348313 jgi|Araly1|348313|fgenesh1_pg.C_scaffold_5001705 1122 0.0
> Ahg348313 jgi|Araly1|348313|fgenesh1_pg.C_scaffold_5001705
Length=1404
Score = 1122 bits (607), Expect = 0.0
Identities = 689/728 (95%), Gaps = 7/728 (1%)
Strand=Plus/Plus
Query 51 ATGGCGACTTTCCTAACAAATGTTGTTTCAATCAAACCTACAATCTTCTCATTCCAGTCC 110
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACTTTCCTGACAAATGTTGTTTCAATCAAACCTACAATCTTCTCATTCCAGTCC 60
Query 111 GAATCCTTCACTCCTTTGCATAC-ACGGGTCAATGTATTCTCCTCGAAACCCTTTCCTTC 169
||||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||||
Sbjct 61 GAATCCTTCACCCCTTTGCAGACGA-GGGCCAATGTATTCTCCTCGAAACCCTTTCCTTC 119
Query 170 TCTCGCTGGAACTTTCTCCCGGAGCTCTAGAACGAGATTCATTCCTTATGCTGTAACGGA 229
|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TCTCGCCGGAACCTTCTCCCGGAGCGCTAGAACGAGATTCATTCCTTATGCTGTAACGGA 179
Query 230 GACGGAAGAAAAACCCGCCGCTTTGGACCCTAGTTCAGAAGCTGCCAGGCGTGTGTATAT 289
|||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 180 GACGGAAGAAAAACCCGCTGCTTTGGACCCTAGTTCCGAAGCCGCCAGGCGTGTCTATAT 239
Query 290 CGGTAACATACCCAGGACGGTGACCAATGAGCAGCTCACTAAACTTGTTGAAGAACACGG 349
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGTAACATACCAAGGACAGTGACCAATGAGCAGCTCACTAAACTTGTTGAAGAACACGG 299
Query 350 TGCTGTTGAAAAAGTTCAGGTGATGTATGATAAGTATTCAGGAAGAAGCCGTCGATTTGG 409
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 TGCTGTTGAAAAAGTTCAGGTGATGTATGATAAGTATTCAGGACGAAGCCGTCGATTTGG 359
Query 410 GTTTGCTACAATGAAATCAGTTGAAGATGCTAATGCTGTGGTTGAGAAATTGAATGGCAA 469
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GTTTGCTACTATGAAATCAGTTGAAGATGCGAATGCTGTGGTTGAGAAATTGAATGGCAA 419
Query 470 TACCGTTGAAGGGCGTGAGATAAAGGTTAACATTACAGAGAAACCTATAGCATCATCA-C 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 TACCGTTGAAGGGCGTGAGATAAAGGTTAACATTACAGAGAAACCTATAGCATCATCATC 479
Query 529 -C-TGATTTATCAGTTCTTCAGTCTGAGGATTCAGCATTTGTAGATAGCCCTTACAAAGT 586
| |||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 480 TCCTGATTTATCACTGCTTCAGTCTGAAGATTCTGCATTTGTAGACAGCCCTTACAAAGT 539
Query 587 GTATGTTGGGAATCTAGCAAAGACTGTTACAAAAGAGATGCTTGAGAATTTGTTTTCTGA 646
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GTATGTAGGAAATCTAGCAAAGACTGTTACAAAGGAGATGCTTGAGAATTTGTTTTCTGA 599
Query 647 GAAAGGGAAAGTAGTAAGTGCTAAGGTTTCAAGAGTACCTGGAACTTCCAAATCCACCGG 706
|||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 600 GAAAGGGAAAGTTGTAAGTGCCAAGGTCTCAAGAGTACCTGGAACTTCGAAATCCACCGG 659
Query 707 GTTTGGATTCGTTACGTTTTCTTCTGAAGAAGATGTGGAAGCAGCCATTGTTG-CTCTTA 765
|||||||||||| || |||||||| ||||||||||||||||| |||||| ||| ||||||
Sbjct 660 GTTTGGATTCGTAACTTTTTCTTCAGAAGAAGATGTGGAAGCTGCCATT-TTGGCTCTTA 718
Query 766 ACAATTCG 773
||||||||
Sbjct 719 ACAATTCG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5