BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52160.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485579 jgi|Araly1|485579|fgenesh2_kg.5__1571__AT3G52160.1 2113 0.0
> Ahg485579 jgi|Araly1|485579|fgenesh2_kg.5__1571__AT3G52160.1
Length=1383
Score = 2113 bits (1144), Expect = 0.0
Identities = 1308/1387 (94%), Gaps = 11/1387 (1%)
Strand=Plus/Plus
Query 1 ACAAGGTTTTGATGCTTAGTGAAAATGGAAAAAGAGGCAACAAAGATGGTGAATGGTGGA 60
|||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ACAAGGGTTTGATGCCTACTGAAAATGGAAAAAGAGGCAACAAAGATGATGAATGGTGGA 60
Query 61 GTTAAGTCAAAGTCACCTAAGGGCAGTCCTGATTTCCTCGGATA--T-AATTTGAGATAT 117
||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||
Sbjct 61 GTTAAGTCAAAGTCACCCAAGGGCAGTCCTGATTTCCTCGGATATGTGAATATGAGATAC 120
Query 118 GTCAAGCTTGGATACATTTAccttctctctctctcacgtaccttttgtttcttccttcct 177
||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 121 GTCAAGCTTGGATACATTTACCTTCTCTCTCTCTCCCGTACCTTTTCTTTCTTCATTCCT 180
Query 178 cctcttcttcttctcttcatctttgtttctcgatttctcccaatcttggctttccctttG 237
|||||||| |||||||| |||||||| | ||| |||||||||||||||||||| |||||
Sbjct 181 CCTCTTCTCCTTCTCTTTATCTTTGTATATCGGTTTCTCCCAATCTTGGCTTTTCCTTTA 240
Query 238 T-CTACCTTC-TTCATCCTCCTCATCTATCATTATCTTACTCCTTCCTCTGTTTTTCTTC 295
| | | |||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TAC-ATCTTCTTTC-TCCTCCTCATCTATCATTTTCTTACTCCTTCCTCTGTTTTTCTTC 298
Query 296 TCGATTTCTCCTGTTACCGCCCACCCGATCATCTCAAGATCACAAAAAGCGACTTCATCG 355
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 299 TCGATTTCTCCTGTTACCGCCCACCCGATCATCTCAAGATTACGAAAAGCGACTTCATCG 358
Query 356 AGCTGGCAATGAAGTCTGGTAACTTCAACGAGACTGCCATCGAGCTTCAAAGAAAAGTGC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCTGGCAATGAAGTCTGGTAACTTCAACGAGACTGCCATCGAGCTTCAAAGAAAAGTGC 418
Query 416 TGGACCAATCAGGGATAGGAGAGGAGAGCTACATGCCGAGAGTGGTCTTCAAGCCTGGTC 475
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 419 TGGACCAATCAGGGATAGGAGAGGAGAGTTACATGCCAAGAGTGGTGTTCAAGCCTGGTC 478
Query 476 ACAGGGTCAATCTTCGTGATGGTCGTGAAGAAGCAGCAATGGTGATCTTTGGAGCAATTG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACAGGGTCAATCTTCGTGATGGTCGTGAAGAAGCAGCAATGGTGATCTTTGGAGCAATTG 538
Query 536 ATGAACTTCTTGCAGCGACCAAAATCAATGTGAAGCATATCAAGATCCTGGTGCTAAACT 595
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 ATGAACTTCTTGCAGCAACCAAAATCAACGTGAAGCATATCAAGATCCTGGTGCTAAACT 598
Query 596 GCGGAGTCCTCAACACCACGCCATCTCTATCGGCCATGGTGATTAACCATTATAAGCTGA 655
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 599 GCGGAGTCCTCAACACCACGCCTTCTCTATCGGCCATGGTGATTAACCATTACAAGCTCA 658
Query 656 GGCATAACACAGAGAGCTACAATCTTGGTGGTATGGGGTGTAGCGCCGGAGTCATAGCCA 715
||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||
Sbjct 659 GGCATAACACAGAGAGCTACAATCTTGGTGGTATGGGATGTGGCGCTGGAATCATAGCCA 718
Query 716 TTGATTTAGCCAAAGATCTTTTAAACGCTCATCAAGGCTCTTACGCTTTGGTGGTGAGCA 775
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 719 TTGATTTAGCCAAAGATCTTTTGAACGCTCATCAAGGCTCTTATGCTTTGGTGGTGAGCA 778
Query 776 CTGAGATAGTAAGCTTCACTTGGTACTCAGGTAATGACGTCGCGTTGCTTCCACCAAATT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTGAGATAGTAAGCTTCACTTGGTACTCAGGTAATGACGTCGCGTTGCTTCCACCAAATT 838
Query 836 GCTTCTTTCGAATGGGAGCAGCTGCAGTTATGCTATCTAGTCGGCGTATCGACAGATGGC 895
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 GCTTCTTTCGAATGGGAGCAGCTGCAGTTATGTTATCTAGTCGGCGTATCGACAGATGGC 898
Query 896 GAGCCAAATACCAACTTATGCAGCTAGTAAGAACCCATAAAGGCATGGAAGACACAAGTT 955
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 GAGCCAAATACCAACTTATGCAGCTAGTAAGAACCCATAAAGGCATGGACGACACAAGTT 958
Query 956 ACAAGAGCATAGAGTTAAGAGAAGACAGAGATGGGAAACAAGGACTATATGTATCTAGAG 1015
| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 ATAAGAGCATAGAATTGAGAGAAGACAGAGATGGGAAACAAGGACTGTATGTATCTAGAG 1018
Query 1016 ATGTAATGGAAGTTGGGCGCCATGCACTGAAAGCAAACATTGCAACGCTTGGTCGTCTTG 1075
|||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1019 ATGTGATGGAAGTTGGTCGCCATGCACTCAAAGCAAACATTGCAACACTTGGTCGTCTTG 1078
Query 1076 AGCCTTCCTTTGAACATATATGCGTATTAGCATCGAGTAAGAAAGTACTTGATGACATTC 1135
||||||| ||||| ||| |||| ||||| |||||||||||||||| |||||||| ||||
Sbjct 1079 AGCCTTCTTTTGAGCATCTATGTGTATTGGCATCGAGTAAGAAAGCGCTTGATGAGATTC 1138
Query 1136 ATAAGGATCTCAAGTTGACAGAAGAGAATATGGAGGCATCAAGACGGACATTGGAGCGTT 1195
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1139 AAAAGGATCTCAAGTTGACGGAAGAGAATATGGAGGCATCAAGACGGACACTGGAACGTT 1198
Query 1196 TCGGGAACACATCAAGCAGCAGTATATGGTACGAGCTGGCTTACCTAGAACACAA-GGCG 1254
||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1199 TCGGGAATACATCAAGCAGCAGTATATGGTACGAGCTGGCTTACTTGGAACACAAAGG-G 1257
Query 1255 AAGATGAAAAGAGGA-GATAGGGTTTGGCAAATCGGTTTCGGGTCAGGGTTTAAATGCAA 1313
|| |||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1258 AAAATGAAAAGAG-ATGATAGGGTTTGGCAGATCAGTTTCGGGTCAGGGTTTAAATGCAA 1316
Query 1314 TAGTGTTGTATGGAAAGCCCTAAAAAACATTGACCCTCCAAGACATAACAACCCATGGAA 1373
|||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||
Sbjct 1317 CAGTGTTGTATGGAAGGCCCTAAAAAACATTGACTCTCCAAGACACAATAACCCATGGAA 1376
Query 1374 TCTCTGA 1380
|||||||
Sbjct 1377 TCTCTGA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5