BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52170.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485580 jgi|Araly1|485580|fgenesh2_kg.5__1572__AT3G52170.1 1585 0.0
> Ahg485580 jgi|Araly1|485580|fgenesh2_kg.5__1572__AT3G52170.1
Length=1782
Score = 1585 bits (858), Expect = 0.0
Identities = 1054/1146 (92%), Gaps = 24/1146 (2%)
Strand=Plus/Plus
Query 638 AAGACATTGGGCTCGTACACCAGTCAATGGACTCCACTGACATATCTATGACTCAGCTTG 697
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 624 AAGACATTGGGCTCGTACACCAGTCAGTGGACTCCACTGAGATATCCATGACTCAGCTTG 683
Query 698 CAACATCTTGCAGTGAAGACAATGATATCAAGAGTAATGCAGGGCTACAAAATAGAATGG 757
|| |||||||||||||||| ||||||||||||||| ||||||||||||||||| | ||||
Sbjct 684 CAGCATCTTGCAGTGAAGAAAATGATATCAAGAGTGATGCAGGGCTACAAAATTGTATGG 743
Query 758 AGACAGTGTGCGATAGCGTTGACACCAAACCACAGGATAAAAGACTCGATGTGGATAACA 817
|||| |||||||||| |||| ||||||||| | || ||||||| |||||||||||||||
Sbjct 744 AGACCGTGTGCGATAATGTTGCCACCAAACCCCTGGGTAAAAGAATCGATGTGGATAACA 803
Query 818 AAGACGAAGGATTTGAGGAACTTCGTTTCATGGAATCAGACGGCACAAAGCCTGTTAACA 877
|||| ||||||||||||||||| | ||| ||| ||||||||| |||||| |||||||| |
Sbjct 804 AAGATGAAGGATTTGAGGAACTACCTTTGATGAAATCAGACGACACAAATCCTGTTAAAA 863
Query 878 ATGACGATAGAGTGAATGATGCAGGAGCAGCAATGACC------GA-AA--TTAAGAACG 928
||||||| ||| |||||||||||||||||||||||||| || || | |||||||
Sbjct 864 ATGACGAAAGACTGAATGATGCAGGAGCAGCAATGACCGAGATTGAGAACGTGAAGAACG 923
Query 929 GATTAGGCACAATTGATATGTCAGCAGAAACAGTTGTTGAGACGTTTCCATTAAAATCTG 988
|||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 924 TATTAGGCATAATTGATATGCCAGCAGAAACAGTTGCTGAGACGTTTCCATTAAAATCTG 983
Query 989 TGACTTCAACGATGGACTCACCGGATGC-ACAACCTACTGA-GTTGAACAAAGTTTGTGA 1046
|||||||||||||||||||||||||| | ||| |||| || | || || ||||||||||
Sbjct 984 TGACTTCAACGATGGACTCACCGGAT-CGACAGCCTAGAGACG-TGGACGAAGTTTGTGA 1041
Query 1047 GGGTGGGAAAGGAACTGAAACGGAGGTGGAAGCTGATCGCAGCA-CAGTAAATCATGTTG 1105
||||| |||||||||||| || |||||||||||| || |||||| || ||||||||||||
Sbjct 1042 GGGTGAGAAAGGAACTGAGACAGAGGTGGAAGCTCATAGCAGCACCA-TAAATCATGTTG 1100
Query 1106 ATCTTGGGGAGATTTCATCATCCACTTCATCTGCTGTACTTGAAGACATAGGGACGGAAG 1165
||||||||||||||||||||| |||||| |||||||||||| |||| | |||||||||||
Sbjct 1101 ATCTTGGGGAGATTTCATCATTCACTTCTTCTGCTGTACTTAAAGAAAAAGGGACGGAAG 1160
Query 1166 TCATTGTTGGTCAAATACCAAATCATATTTCTGTCCCTATGGAAAAGAAAGTTGGAGAGG 1225
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TCATTGTTGGTCAAATGCCAAATCATATTTCTGTCCCTATGGAAAAGAAAGTTGGAGAGG 1220
Query 1226 AAATTGTAAATTCTGCTTCAGTAGATGTTGAATGTGCTGATGCTAAAGAGACAGTTGTTG 1285
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1221 AAATTGTAAATCCTGCTTCAGTAGATGTTGAATGTGCTGATACTAAAGAGACGGTTGTTG 1280
Query 1286 TGAATGGTGTGATTGGCAACGTCCATGAGACAAAGGAATTTAGTAATGGAACTTTGACAG 1345
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1281 CGAGTGGTGTGATTGGCAACATCCATGAGACAAAGGAATTTAGTAATGGAACTTTGACAG 1340
Query 1346 CTGAACAGAAAATGCCAACATCTAGCACTGAGTCGGGAAGTCGTAAGAACGACAGAGCAA 1405
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1341 CTGAACGGAAAATGCCAACATCTAGCACTGAGTTGGGAAGTCCTAAGAACGACAAAGCAA 1400
Query 1406 AAGTGGACACTGTGAGTAGCTATGCCGGGAATGAAGTCGCAAGTGTAGAGAAGAAGGCAA 1465
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 AAGTGGACACTATGAGTAGCTATGCCGGGAATGAAGTCGCAAGTGTAGAGAAGAAGGCAA 1460
Query 1466 CCATGGAAAAAGGGAAAATTGATGCTCCAGATAGTTCCAGCTCTCAAAAAGAAAACAATG 1525
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1461 CCATGGAAAAAGGGAAACTTGATGCTCCAGATAGTTCAAGCTCTCAAAAAGAAAACAATG 1520
Query 1526 CAACATTAAACAGAATTAAACCTGAATCGTGGAAAGGGGAATCTAATATGGGAAGACAAG 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 CAACATTAAACAGAATTAAACCTGAATCGTGGAAAGGGGAATCTAATATGGGAAGACAAG 1580
Query 1586 AAACAAATCCTCTCTTGGCAGTTCTGAAATCTTTCGTGACAGCCTTTGTGAAGTTTTGGT 1645
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1581 AAACAAATCCTCTTTTGGCAGTTCTGAAATCTTTCTTCACAGCCTTTGTGAAGTTTTGGT 1640
Query 1646 CAGAGTAATAATTCATTGTAGAGATCCGTTGGTTAAA-CTTTTGTAGTTTTCATTAGTGA 1704
| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1641 CCGAGTAATAATACATTGTAGAGATCTGTTGGTTAAAGCTTTTGTAGTTTTCATTAGTGA 1700
Query 1705 GAGTTGGTAAGCTTAA--TA----T--GGTTTGAAATGTGCTGTACAATTTTTGTGTTGA 1756
||||||||||| |||| || | ||||||||||||||||||||||| |||||||||
Sbjct 1701 GAGTTGGTAAGGTTAAGATAAAAATATGGTTTGAAATGTGCTGTACAATTCTTGTGTTGA 1760
Query 1757 ATGTTT 1762
||||||
Sbjct 1761 ATGTTT 1766
Score = 652 bits (353), Expect = 0.0
Identities = 452/496 (91%), Gaps = 22/496 (4%)
Strand=Plus/Plus
Query 17 TGTGTCTGTGTACTGCGTAGGGTTTAGTGAGTCCATTTGCAAAGATGACTCGTGAGTTCT 76
|||||||||||||||||||||| || | ||||||||||| |||||||||||||| ||||
Sbjct 1 TGTGTCTGTGTACTGCGTAGGG-TT--T-AGTCCATTTGCGAAGATGACTCGTGAATTCT 56
Query 77 AATCTATCG-AC-CTCTCTCGTTTTCTCGCAGTTGCAGAGTC----T--CAGGATTATAT 128
|||| ||| | ||||||| ||||||||| ||||||||||| | ||||| |||||
Sbjct 57 AATC--TCGCCCTCTCTCTCTTTTTCTCGCGGTTGCAGAGTCGTAGTAGCAGGA-TATAT 113
Query 129 A-ATAGGACAAAGAGAGAGAGACAACATGCACTCTCTTAAGACTACTTGCGTTGGGCAAA 187
| |||| || || ||| | || |||||||||||| | ||||||| || || ||||||||
Sbjct 114 ATATAGAAC-AA-AGA-A-AG--AACATGCACTCTATGAAGACTAGTTACGCTGGGCAAA 167
Query 188 TATTTGCTCTAGCTAAGCCTCACGATTCTGTAGGCAAGAGGACTCGTAATCGGATTCCTA 247
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 168 TTTTTGCTCTAGCTAAGCCTCACGATTCTGGAGGCAAGAGGACTCGTAATCGGATTCCCA 227
Query 248 AAGAAGAGAGAAAGACACTGGTTGAATCTTTTATAAAGAAGCATCAGAAACTAAACAATG 307
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 228 AAGAAGAGAGAAAGACACTGGTGGAATCTTTTATAAAGAAGCATCAAAAACTAAACAATG 287
Query 308 GGAGTTTTCCTTCACTTAGCCTCACACACAAGGAGGTTGGTGGATCTTTCTACACTATAA 367
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GGAGTTTTCCTTCACTTAGTCTCACACACAAGGAGGTTGGTGGATCTTTCTACACTATAA 347
Query 368 GGGAGATTGTTAGAGAGATTATCCAAGAAAATAGAGTCCTTGGTCCTGGTGACTTGCTAC 427
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 348 GGGAGATTGTCAGAGAGATTATCCAAGAAAATAGAGTCCTTGGTCCTGGTGACTTGCTTC 407
Query 428 TTGAGGGAAATGGCTCTGTGCAAGATCAAAGTCTGTCAAGTTCAATCCTGATGGATCCTG 487
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 408 TTGAGGGAAATGGCTCTGTGCATGATCAAAGTCTTTCAAGTTCTATCCTGATGGATCCTG 467
Query 488 TGCCCCCTTTATCTTT 503
||||||||||||||||
Sbjct 468 TGCCCCCTTTATCTTT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5