BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52210.3
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485587 jgi|Araly1|485587|fgenesh2_kg.5__1579__AT3G52210.3 1849 0.0
> Ahg485587 jgi|Araly1|485587|fgenesh2_kg.5__1579__AT3G52210.3
Length=1268
Score = 1849 bits (1001), Expect = 0.0
Identities = 1128/1189 (95%), Gaps = 9/1189 (1%)
Strand=Plus/Plus
Query 2 GCCGGAGAAGAAAGACATGAGCGGCTTCGTGGTTTCAAAACCGGAGCAGAGCCATCATCG 61
||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 1 GCCGGAGAAGAAAAAAATGAGCGGCTTCGCGGTTTCAAAACCGGAGCAGAGTCATTATCG 60
Query 62 TCTCTTCGATTTCGCAAAGACGGCCATAATCAACATCTTCGCACATCCTTATGCCACTGT 121
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCTCTTCGATTTCGCAAAGACGGCCATAATCAACATCTTCGCACATCCTTACACCACTGT 120
Query 122 TTGCGAATTGTACTGTGGCGGAGCTCCCGAAACCGACAAGTGGGAAGCTGCTCCGATTGG 181
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 TTGCGAATTGTACTGTGGCGGAGCTCCCGACACTGACAAGTGGGAAGCTGCTCCGATTGG 180
Query 182 TCACTACATCGGAATTGTAGATACATCTTCTGGGATTTCTTCTGTACGAGAAGCTTGGGA 241
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 181 TCATTACATCGGAATTGTAGATACTTCTTCTGGAATTTCTTCTGTACGAGAAGCTTGGGA 240
Query 242 GAGTCAGAGGAAGAATTACGATGTGGAATTCTTTGAAGCTGATCCTTCCAAGGATGATTT 301
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GAGTCAAAGGAAGAATTACGATGTGGAATTCTTTGAAGCTGATCCTTCCAAGGATGATCT 300
Query 302 TGAAATCCAGCTACAGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCT 361
||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 301 TGAAATCCAGCTACAGAAGAAGTTGGGGCAGGCTGATTTAGTTTCCTGTTGGCGCCATCT 360
Query 362 CCAGTTATGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCATGTTT 421
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GCAGTTATGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTTACTAATGTAGCATGTTT 420
Query 422 ACTGAAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGGGCAAA 481
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 421 ATTGAAACCAGGGGGTTATTTTTTCGGTATTACTCCTGACTCGTCTACGATCTGGGCTAA 480
Query 482 GTACCAGAAAAATGTTGAAGCATACCACAACAGAAGCGGTGCAAAGCCTAATGTATTTCC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTACCAGAAAAATGTTGAAGCATACCACAACAGAAGCGGTGCAAAGCCTAATGTATTTCC 540
Query 542 AAACTACATTCGGTCTGAAAGTTACATGATCACTTTCGAATTGGAGGAAGAAAAATTTCC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAACTACATTCGGTCTGAAAGTTACATGATCACTTTCGAATTGGAGGAAGAAAAATTTCT 600
Query 602 GCTGTTTGGAAAGAGGTACCAGCTGAAATTTTCTGGTGACAATGCTTCTGAAGACCATTG 661
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 601 GCTGTTTGGAAAGAGGTACCAGCTGAAATTTTCTGGTGACAGTGCTTCGGAAGACCATTG 660
Query 662 CTTGGTTCACTTCCCAAGCTTAATCAGGTTAGCGAGGGAAGCTGGCCTTGAATTTGTGGA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 CTTGGTTCACTTCCCAAGCTTAATCAGGTTAGCGAGGGAAGCTGGCCTTGAATATGTGGA 720
Query 722 AATTCAAAGTTTAACAGATTTTTATGATGATAACAGAGCCCAGTTTGCAAGCTTGCTGAT 781
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 AATTCAAAGCTTAACAGATTTTTATGATGATAACAGAGCCCAATTTGCAAGCTTGCTGAT 780
Query 782 GAATGCTGGCCCGAATTTCGTTGACCCTAGGGGAAAACTTCTTCCAAGAGCATTTGATTT 841
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 GAATGCTGGCCCGAACTTCGTTGACCCTAGGGGAAAACTTCTTCCACGAGCATTTGATTT 840
Query 842 GTTAGGTCTGTATGCAACATTCATATTTCAGAAGCCTGACCCAGATATCGAACCTCCTCT 901
|||||| || |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 841 GTTAGGGCTCTATGCAACATTCATATTTCAGAAGCCTGACCCAGATCTTGAACCTCCTCT 900
Query 902 AACGACCCCAATACCTTTTGAAAGCTCCAATAATCATGATGAGAGAGAATTGCCAGTTAT 961
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 901 AACGACCCCAATACCTTTTGAGAGCTCCAATAATCATGATGAGAGAGAATTGCCGGTGAT 960
Query 962 CACGGTGATCACTGACGCAAGTGCACCAGCAGAAGATCCATCACAAGGACTAGGGAAGAT 1021
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 CACGGTGATCACTGATGCAAGTGCACCGGCAGAAGATCCATCACAAGGACTAGGGAAGAT 1020
Query 1022 T-GTTGAACAAAAAGGAATACTGGGACCAGGCCCTGCTGATTTACGTTTCTCTGAAGCAA 1080
| || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1021 TAGT-GAACAAAAAGGAATATTGGGACCAGGCCCTGCTGATTTACGTTTCTCTGAGGCAA 1079
Query 1081 TTTGATGCCTTTTATT--TTAGGAAGATGTACTGCTTTGGTGATGTAGTGAAAGTTGTTT 1138
||||||||||||| || |||||||||||||||||||||||||||||| |||||| || |
Sbjct 1080 TTTGATGCCTTTT-TTCATTAGGAAGATGTACTGCTTTGGTGATGTAGCGAAAGTGGTAT 1138
Query 1139 ATCAGT-GC--CACAGATGAGCTAAAACGAGCGTCTCGGTTTGTTATAA 1184
|||||| | |||||||||| |||||| || |||| ||||| || |||
Sbjct 1139 ATCAGTAGTGACACAGATGAGGTAAAACCAGAGTCTGGGTTTTTT-TAA 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5