BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52230.1

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938099 jgi|Araly1|938099|scaffold_502290.1                        673    0.0  


> Ahg938099 jgi|Araly1|938099|scaffold_502290.1
Length=478

 Score =  673 bits (364),  Expect = 0.0
 Identities = 448/486 (92%), Gaps = 16/486 (3%)
 Strand=Plus/Plus

Query  93   TCCGTCTCGGTGGAGGAAAAATGGCTGAAGAAGCTCAAGTAGATCGTTCTAATGGCTCTG  152
            |||||||||||| |  || ||||||||||||||||| |  ||||||| ||||||||||||
Sbjct  1    TCCGTCTCGGTGTATCAACAATGGCTGAAGAAGCTC-A--AGATCGTGCTAATGGCTCTG  57

Query  153  ATTCATCATCTCCTCCCATAAAGTTACCTCCTTTCATCACCAACCTATTCGCCTTTCTTC  212
            | |  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  58   A-T--TCATCTCCTCCCATAAAGTTACCTCCTTTCATCTCCAACCTATTCGCCTTTCTTC  114

Query  213  AACCTAAGCCTCCTCCTGCTACTATTGATGCCAATGCTCCTAAACCTACCGGCGAGAAGG  272
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  115  AACCTAAGCCTCCTCCTGCTACTATTGATGCCAATGCTCCTAAACCCACCGGCGAGAAGG  174

Query  273  AACCTCTGAAATCGACCTACGAGACTGTCACTTTCCCTTACAATCCACCCAAAAGCGCAG  332
            |||||| ||| ||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct  175  AACCTCAGAAGTCGACTTACGAGACTGTCTCTTTCCCTTACAATCCACCCAAAACCGCAG  234

Query  333  AGCCAATCAAGTTTGAGGCTGAGCCCAGCTCTGGCAGGACTTCCAACTCTGTCATCCTTT  392
            ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  235  AGCCAATCAAGTTTGAGGCTGAGCCCAGCTCTGGCAGGACTTCTAACTCCGTCATCCTTT  294

Query  393  GGCAGGTATATGCACTTGGAGGGTTTCTTGTCCTGAAGTGGGCCTGGGCAAGATGGAATG  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  GGCAGGTATATGCACTTGGAGGGTTTCTTGTCCTGAAGTGGGCCTGGGCAAGATGGAATG  354

Query  453  AAAGGAACGAGAGAAGTGACAAAAAGGAGGCGACGGGtgatgatgatcag------aa--  504
            ||||||||||||||||||||||||| |||||||||||||||||||| ||       ||  
Sbjct  355  AAAGGAACGAGAGAAGTGACAAAAATGAGGCGACGGGTGATGATGACCAACCTTCTAATC  414

Query  505  agatgatgatgaggatgatcaatcatctgatgggcatgaAGACTAGTCATATTACTTGAA  564
            |||  | ||||| ||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct  415  AGAA-A-GATGATGATGATCAATCTTCTGATGGGCATGAAGACTAGTCATATTGCATGAA  472

Query  565  CACGAT  570
            ||||||
Sbjct  473  CACGAT  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31070177355


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5