BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52240.1
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323774 jgi|Araly1|323774|fgenesh1_pm.C_scaffold_5001318 2966 0.0
> Ahg323774 jgi|Araly1|323774|fgenesh1_pm.C_scaffold_5001318
Length=2067
Score = 2966 bits (1606), Expect = 0.0
Identities = 1920/2068 (93%), Gaps = 36/2068 (2%)
Strand=Plus/Plus
Query 82 ATGGCGAATCAAGACAAGTTAGATCATCATCGGTGTATTGATTCAGAGGCACAAGATCCT 141
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCGAATCAAGACAAGTTAGATCATCATCGGTGTGTTGATTCAGAGGCACAAGATCCT 60
Query 142 ACTTCAGTGACTATTGAGTTTCTTCGTGCACGTTTA-TTAGCTGAAAGAGCTGTTTCCAA 200
|||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 61 ACTTCAATGACTATTGAGTTTCTGCGTGCACGTTTACTT-GCTGAAAGAGCTGTTTCCAA 119
Query 201 GAGTGCTAGAGCAAAGCTTGATGGTCTCGCTGATAAAGTAGCTGAGTTAGAGGAACAGCT 260
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 120 GAGTGCTAGAGCAAAGCTTGATGGCCTCGCTGATAAAGTAGCTGAGTTGGAGGAACAGCT 179
Query 261 CAAGATTGTATCTTTACAGAGGAAGAAGGCTGAACAGGCAACTGCTGATGTTCTTGCGAT 320
||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 180 CAAGATTGTGTCTTTACAGAGAAAGAAAGCAGAACAGGCAACTGCTGATGTTCTTGCGAT 239
Query 321 CTTAGAGGAAAATGGGTATA---ATGATGTGTCTGATGATTATGATTCAAACTCTGATCA 377
| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 240 CCTAGAGGAAAATGGATATACTGATGATGTCTCTGATGATTATGATTCAAACTCTGATCA 299
Query 378 TGAATGCTACTCTCAGAGTAACTCAG-TGTTAGGCAAAAGTTTGTCCTGGAAAGGTCGCA 436
||||||||||||||||| || |||| | ||||| |||||||| |||||||||||||| |
Sbjct 300 TGAATGCTACTCTCAGACAAATTCAGCT-TTAGGGAAAAGTTTATCCTGGAAAGGTCGTA 358
Query 437 GGAGGGAACCAGGTTCTTCTGACAAGATCAAGGAAAACCGGAATAGGAGACATCACAGAG 496
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 GGACGGAACCGGGTTCTTCTGACAAGATCAAGGAAAACCGGAATAGGAGACATCATAGAG 418
Query 497 GTTTCGAGTGTGCTTATTTTTCCTCACCGAGACATCGTCAAGGAAGATCTTGTCGGCAAA 556
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 419 GTTTCGAGTGTGCTTATTTTTCCTCACCGAGACACCGCCAAGGAAGATCTTGTCGCCAAA 478
Query 557 TTAGACGTGGTGAAGCAAGAAATGTATCTGAGGATTACAAGAGAGATGGAAATCCGGTTG 616
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTAGACGTGGTGAATCAAGAAATGTATCTGAGGATTACAAGAGAGATGGAAATCCGGTTG 538
Query 617 AATTTCAAGAAAATGGAGTTCGCACTGAAATGCTTCCTCAAAAGAATGATCAAGTATCTA 676
| ||||||||||||||||||||||||||||||||||||||| |||||| | | ||| |
Sbjct 539 ATTTTCAAGAAAATGGAGTTCGCACTGAAATGCTTCCTCAAGCGAATGAAGATGCATCCA 598
Query 677 GAACCGTGGTGGATGTTGCTGTTGTGAAGGGAGACGATAGTTTGAACAAGTTGTCAAATT 736
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 GAACCGTGGTGGATGTTGCTGTTGTGAAGGGAGACGAAAGTTTGAACAAGTTGTCAAATT 658
Query 737 CAAATGGTTTAGAGAAGGGAAACAGTACGGACATCAACTTGGAGAGAGCGTTAGAAAACC 796
|||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 659 CAAATGGTTTAGAGAAAGAAAACAGTACGGATATCAACTTGGAGAGAGCATTAGAAAACC 718
Query 797 GTGCTCAAGTTATCGGATCTTTTGAAGAAATGGAAGAGACTCAAAGGGAATGGGAGAAAA 856
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 GTGCTCAAGTTATCGGATCTTTTGAAGATATGGAAGAGACTCAAAGGGAATGGGAGAAAA 778
Query 857 ATTTCAGAGAGAATAAATCATCTGCCCTGGATTTATGTGACGTTGGAAACCATTCAGATG 916
| |||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 779 AGTTCAGAGAAAATAAATCATCTGCCCTGGATTTATGTGATGTAGGAAACCATTCTGATG 838
Query 917 TGACGGATGAAAGTAACGGAGAAAAAGCTCAATCTCCACTTCAAGGTTCTACAGTAGTCC 976
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||
Sbjct 839 TGACGGATGAAAGTAACGGGGAAAAAGCCCAATCTCCGCTTCAAGGTTCCACAGTAGTCC 898
Query 977 CTTCACTCCGTGATACAAGGTCTATAGCTAATGAAGTTGACTTTAGAGAATCGTTTGAAA 1036
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 CTTCACTCCGTGATACAAGGTCTATAGCTAATGAAGTTGACTTTAGGGAATCGTTTGAAA 958
Query 1037 CTTTGTCGCATGGTTCACCTGATAATTCAGTAACGTCACCTGATAAGTGCTGCAATAGTT 1096
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 CTTTGTCACATGGTTCACCTGATAATTCAGTAACGTCACCTGATAAGTGCTGCAAAAGTT 1018
Query 1097 GTGGTTCCAGATCTGTGGAACAAGATGCTTATTCTTCTCGAGACAAAGGAAAACATATTT 1156
|||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 1019 GTGGTTCCAGATCTCTGGAACAAGATGCTTCTTCTTCTAGAGACAAAGGAAAACATGTTT 1078
Query 1157 CTGAGAGCCCTACAAGTGAGTATTCCCAACCACAGAGCAGTAAAGGTATCAATGAGCATT 1216
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 1079 CTGAGAGCCCTAAAAGTGAGTATTCCCATCCACAGAGCTGTAAAGGTATCAATGAGCACT 1138
Query 1217 CTTCATCAACTATTCGGTCGCCTCCTGTAACGCAACCAAACTCGAGAGGTGGTTTCTTTG 1276
| ||||||||||||||||| |||| |||||||||||||| ||| |||||||||| |||||
Sbjct 1139 CGTCATCAACTATTCGGTCACCTCTTGTAACGCAACCAACCTCTAGAGGTGGTTCCTTTG 1198
Query 1277 GCAGTACTACCACTACCATTCATG-AAGTAGATGATCCATTAGTTTCAGTGAAAGATGTG 1335
||||||||||||| |||| || | |||||||| ||||||||||| || ||||||| | |
Sbjct 1199 ACAGTACTACCACTGCCATCCA-GAAAGTAGATTATCCATTAGTTCCACTGAAAGAGGGG 1257
Query 1336 AAGCCTGATACTTGTGAAACTGTACTGACCGCACTAAAGCAAGCGAAGCTGTCTCTGCAA 1395
||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 1258 AAGTCTGATACTTGTGAAACTGTACTCACCGCGCTAAAGCAAGCGAAGTTGTCTCTGCAA 1317
Query 1396 GAGAAAGTCAATAGCCTACATATCAGAAACCCGGATTGTCATTCTGAAAGCTCATATCCT 1455
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 1318 GAGAAAGTCAATAGCCTACATATCAGAAAACCTGATTGTCATTCTGAAAGCTCGTATCCT 1377
Query 1456 TCAACACCAGGTTCATATATGAACACATATGCACTACCGATGGAACCAGCATTTAGTACT 1515
|||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||
Sbjct 1378 TCAACACCAGGTTCATATATGAACACGTACGCATTACCGATAGAACCAGCATTTAGTACT 1437
Query 1516 AAACCATCTCTCCCTGCTTCCAGTGTCGGGTCCATGGTAGAGTTTCCAGTTATCTGTGCT 1575
||||||||||||||||||||||| ||| |||||||||||||||||| ||| | || |
Sbjct 1438 AAACCATCTCTCCCTGCTTCCAGCATCGAGTCCATGGTAGAGTTTCCTGTTGGC--TG-T 1494
Query 1576 GCTGGACTTTTCCGTGTCCCCACCGATTTTACATCTGATGCTTCAAATAGGAACACTTTT 1635
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 1495 GCTGGACTTTTCCGTGTACCCACTGATTTTTCATCTGATGCTTCAAATAGGAACAGTTTT 1554
Query 1636 CTAGCTTCGAGTTCTCAGAACGCCATGGTTACCCATATGCCTGAGCGAGACGTCCCCCTA 1695
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1555 CTAGCTTCGAGTTCTCAGAACGCTATGGTTACCCATATGCCTGAGCGAGACATCCCCCTA 1614
Query 1696 GTACCTGGAGATCAGCTTTTCAGCAGAACAGCCACAAACAATCTCCTAAATACTGGCTTC 1755
|||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||
Sbjct 1615 GTACCTGGAGATCAGCTTTTCACCAAAACAGCCTCAAACAACCTCCTAAATACTGGCTTC 1674
Query 1756 CAAAGCCAACTAGAAACCAGTCCTCCTTTGTCAGTGGATGACCGACTTTCGACCACCCCA 1815
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1675 CAAAGCCAACTAGAAACCAGTCCTCCTTTGTCAGTGGATGACCGACTTTTGACCACCCCA 1734
Query 1816 TACATCGGTGGACCAAAACTATGGTCCAGCTTCAGGGCAGATGGTCCACCGATGGTTGAT 1875
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1735 TACATCGGTGGACCAAAACTATGGTCCAGCTTCAGGGCAGATGGTCCACCGATGATTGAT 1794
Query 1876 GTTCCAGGATTCAGACTTAATAAAGGCATACCAAGAGTTTCAGGCAGTGCAATCTCTGGT 1935
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct 1795 GTTCCAGGATTCAGACTTAATAAAGGCACACCAAGTGTTTCAGGCAGTGGAATCTCTGGT 1854
Query 1936 GGAACATCTGGTTTTGAAGGTAACCAAGTATCGTCAA---G-T--A-C--A--TA----- 1979
|||||||||||||||||||||||||||||||| |||| | | | | | ||
Sbjct 1855 GGAACATCTGGTTTTGAAGGTAACCAAGTATCCTCAACTAGCTTCAACTTAGATAGACGA 1914
Query 1980 -----TA-AT--ACCCCTGTGACACCTACTCGAAGCTTGTATCCTGATTCAGTTCTAAGC 2031
|| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1915 GCAAGTACATCTACCCCTGTGACACCTACTCGAAGCTTGTATCCCGATTCAGTTCTAAGT 1974
Query 2032 AGTAGAGAATTGTATTCGACTCCTTATTACACACGCCCGTTTGGGCTGTCTCCTACTAGT 2091
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1975 AGTAGAGAATTGTATTCAACTCCTTATTACACACGCCCAATTGGGCTGCCTCCTACTAGT 2034
Query 2092 GGTTCAGATGATGGCTTATTTAGGCGAG 2119
||||||||||||||||||||||||||||
Sbjct 2035 GGTTCAGATGATGGCTTATTTAGGCGAG 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87074300070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5