BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52260.3
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938102 jgi|Araly1|938102|scaffold_502293.1 1123 0.0
> Ahg938102 jgi|Araly1|938102|scaffold_502293.1
Length=1204
Score = 1123 bits (608), Expect = 0.0
Identities = 691/730 (95%), Gaps = 9/730 (1%)
Strand=Plus/Plus
Query 348 CTA-GGTGGATTCAACGAATCCAAAACGGACAGGTTTATACAAATTGACGGTGAAGTTGT 406
||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 177 CTAGGGTGGATTCAACGAATCCAAAACGGACA-G---ATACAAATTGACGGTGAAGTTGT 232
Query 407 AAAAGATCCCAACACACTTCTTAGGAGTGGTTCGAAATTAGTTTA-CAGTAGGCTTCCTT 465
|||||||||||||||||||||||||||||||| || |||||||| || |||||||||||
Sbjct 233 CAAAGATCCCAACACACTTCTTAGGAGTGGTTCCAAGTTAGTTTACCA-TAGGCTTCCTT 291
Query 466 GGAAGGAACCTGACACGCCATACTCGCTTGAAGTTTTGTATGAAGATGATGATTTGATCG 525
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 292 GGAAGGAACCTGACACGCCATACTCGCTACAAGTTTTGTATGAAGATGATGATTTGATCG 351
Query 526 CTTTAAACAAGCCTTCTGGACTTCAAGTATTGCCCGGAGGACTTTTCCAGCAACGGACTG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTTTAAACAAGCCTTCTGGACTTCAAGTATTGCCCGGAGGACTTTTCCAGCAACGGACTG 411
Query 586 TGTTGACGCAGCTGCAGTGGTGTTTTGGTAAAAATGACTCTTACA-TCGGATCGCGTGAA 644
||||||||||||||||||||||||| |||||||||| ||||||| | ||||||| ||||
Sbjct 412 TGTTGACGCAGCTGCAGTGGTGTTTCCGTAAAAATGATTCTTACACT-GGATCGCATGAA 470
Query 645 TCACCACATCCTGTCCCTGTACATCGACTGGGTAGAGGAACTTCAGGTATACTTCTCTGT 704
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCACCACACCCTGTCCCTGTACATCGACTGGGTAGAGGAACTTCAGGTATACTTCTCTGT 530
Query 705 GCAAAGACCAAGCTGGCAAAAACGAAACTTGCAGCGTATTTTGCTGAGGGAACATCTCTT 764
|| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 531 GCGAAGACAAAGCTTGCAAAAACTAAACTTGCAGCGTATTTTGCTGAGGGAACATCTCTT 590
Query 765 GTCGGCTCCGGCAACCTGGATCAAGAGTGTGGAACAGGAAGAAAACTATCAAAGATATAT 824
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 591 GTCGGGTCCGGCAACCTGGATCAAGAGTGTGGAAAAGGAAGAAAACTATCAAAGATATAT 650
Query 825 CGAGCACTAGCAGATGGTATAGTTGAAGAAGACGAGGTAGTAATCAAACAGCCTATAGGA 884
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 651 CGAGCACTAGCAGATGGTATAGTTGAAGAAAACGAGGTAGTAATCAAACAGCCTTTAGGA 710
Query 885 GTGGTTCGATATCCTGGGGTCGCACAAGGATTATATGTTGCTTCTCCGGAAGGGAAACCT 944
|||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 711 GTGGTTCGGTATCCTGGGGTAGCAAAAGGATTATATGTTGCTTCTCCGGAAGGCAAACCT 770
Query 945 GCTTTCAGTAAAGTATTTGTTCTGGAGAGGGACAGGGaaaaaaaTTGCTCGCTTGTTAAG 1004
|||||||| |||||| ||||||||||||||||| | |||| |||||| |||| ||||||
Sbjct 771 GCTTTCAGCAAAGTAGCTGTTCTGGAGAGGGACAAGCAAAAGAATTGCACGCTGGTTAAG 830
Query 1005 GTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATACATGGGACAT 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATACATGGGACAT 890
Query 1065 CCCTTGGTAG 1074
||||||||||
Sbjct 891 CCCTTGGTAG 900
Score = 425 bits (230), Expect = 3e-118
Identities = 259/273 (95%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 1126 GGGACCCTCTTTATGTAGCGGGCGGCCAACCAAAGTGCTTTGATCCCGATCTTGTAGATG 1185
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GGGACCCTCTTTATGTAGCAGGCGGCCAACCAAAGTGCTTTGATCCCGATCTTGTAGATG 978
Query 1186 ATGCCGCAGCCTTTGCCGAAGATGGAGGTTACAGAAGGCCAAATCAGGCTGTTCCTGGGG 1245
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATGCTGTAGCCTTTGCCGAAGATGGAGGTTACAGAAGGCCAAATCAGGCTGTTCCTGGGG 1038
Query 1246 ATTGTGGATATCATCTGCATGCTCATCAAGTAGAGCTACCAAACCTGCTGAACACTCATA 1305
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1039 ACTGTGGATATCATCTGCATGCTCATCAAGTAGAGCTACCAAACCTGTTGAACACTCATA 1098
Query 1306 AGGTAGTAAAAATTGTAGCACCGCTGCCACCAATTCTCCAAACAAGATGTGAGAC-GTAA 1364
|||||||||||||||||||||| || |||||||| ||||||||||| |||||| | | ||
Sbjct 1099 AGGTAGTAAAAATTGTAGCACCTCTACCACCAATCCTCCAAACAAGTTGTGAGGCAG-AA 1157
Query 1365 GAAAAAGGTTTATCCTCCTGCAAGTGAAGTTGC 1397
||||| |||| ||||||||||||||||||||||
Sbjct 1158 GAAAAGGGTTAATCCTCCTGCAAGTGAAGTTGC 1190
Score = 248 bits (134), Expect = 8e-65
Identities = 146/152 (96%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 116 GTCGCCGCCGCCGCAACGTATCGGCTTGCCATGGCCTGAGCTTAACGATGGTTTGGCATA 175
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 32 GTCGCCGCCGCCGCAACGTATCGGCTTGCCATGGCCGGAGCTCAACGATGGTTTGGCATA 91
Query 176 CAAGGATGCCATCTCTTCTTCTGAATCAGAGTTAACGACGGTGTCAGAATTCTACTTCAC 235
|||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 92 CAAGGATGTCATCTCTTCTTCTGAGTCAGAGTTAACGACGGTGTCCGATTTCTACTTCAC 151
Query 236 CAAATACAAGAGTTCAGCTCCATTGCTAGGGT 267
||||||||||||||||||||||||||||||||
Sbjct 152 CAAATACAAGAGTTCAGCTCCATTGCTAGGGT 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5