BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52270.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348323 jgi|Araly1|348323|fgenesh1_pg.C_scaffold_5001715 1086 0.0
Ahg898135 jgi|Araly1|898135|Al_scaffold_0005_2101 510 5e-144
> Ahg348323 jgi|Araly1|348323|fgenesh1_pg.C_scaffold_5001715
Length=777
Score = 1086 bits (588), Expect = 0.0
Identities = 730/796 (92%), Gaps = 20/796 (3%)
Strand=Plus/Plus
Query 58 ATGGAAGAT-GTAAAGGTGGAAATGAAGGTAAGGAAGAATGAGAATGAAGCGTTGGAAAC 116
||||||||| || ||||| ||| | ||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGAAGATGGT-AAGGTAGAATTTAAGGTAAAGAAGAATGAGAATGAAGCATTGGAAAC 59
Query 117 GGGTTTGGCAGAGAGATCGATGTTGCTGATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 176
||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 GGGATTAGCAGATAGATCGATGTTGCTAATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 119
Query 177 CCAATCTCATTCTTTTCCTGACGATCCGTACCGTCCTGACGATCCGTACCGTCCTGACGC 236
|| | || || ||||| | | |||||||||||||||||||||||||||
Sbjct 120 CC-A-GTC--TC--TTCCT-----T---T----TCCTGACGATCCGTACCGTCCTGACGC 161
Query 237 CAAAGTCATCCTCGGCGTCGATCCTCTGGCTCACGAGGACGAAGGGACCCAATTCGTAAT 296
||||||||||| |||||||| |||||||| ||||||||||| |||| ||||||||||
Sbjct 162 TAAAGTCATCCTTAACGTCGATCTTCTGGCTCCCGAGGACGAAGAGACCAAATTCGTAAT 221
Query 297 GGAATTAGCTCGAGCTGACTCTGGAAACATGCCGAGGCGTTACACTTTGGATATGTCTAA 356
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 222 GGAATTAGCTCGAGCTGAATCTGGAAACATGCCGAGGCGTTACACCTTAGATATGTCTAA 281
Query 357 AGATTTTATTCCTATGAATGTTTTCTGTGAGTCTTCAGATGGAAAGATGTCAGTAGAAGG 416
|||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 282 AGATTTCATCCCCATGAATGTTTTCTGTGAATCTTCAGATGGAAAGATGTCAGTAGAAGG 341
Query 417 GAAGATAAAGAACAAATTTGATATGAGGCCTCATAACGAAAATATTGAAAGCTATGGGAG 476
|||||| |||||||||||||| ||||||||||||||||| || || || |||||||||||
Sbjct 342 GAAGATTAAGAACAAATTTGACATGAGGCCTCATAACGAGAACATCGAGAGCTATGGGAG 401
Query 477 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAATAGACAGATCCAGGTCATTGA 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 402 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAACAGACAGATCCAGGTCATTGA 461
Query 537 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 521
Query 597 GGAAAAGAAAAAATTGACGAACAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 656
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 522 TGAAAAGAAGAAATTGACAAATAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 581
Query 657 AGAGATGGAGGAGGTGATGTTTAATCTCTTTGAAAGACAATCAAATTGGACTCTGAGGCT 716
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 582 AGAGATGGAAGAGGTCATGTTTAATCTCTTTGAAAGACAGTCAAATTGGACTCTGAGGCT 641
Query 717 GCTCATTCAGGAAACTGACCAGCCAGAGCAATTCCTGAAAGACTTGTTGAAAGATCTATG 776
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 642 GCTCATTCAGGAAACTGATCAGCCAGAGCAATTCCTGAAAGACTTGCTGAGAGATCTTTG 701
Query 777 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAATATAAGAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 702 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAGTACAAGAA 761
Query 837 AGCCACTCAGGAATAG 852
|||||| |||||||||
Sbjct 762 AGCCACACAGGAATAG 777
> Ahg898135 jgi|Araly1|898135|Al_scaffold_0005_2101
Length=393
Score = 510 bits (276), Expect = 5e-144
Identities = 308/324 (95%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 529 GTCATTGATAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACC 588
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 70 GTCATTGATGATGCCAGAGGAATGCATATGAGGCCAATGCCAGAAATGATAATCCCAACC 129
Query 589 GCGGCTCCGGAAAAGAAAAAATTGACGAACAGGACATCAGAAATGAAGAGAACAAGAAGG 648
|||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 130 GCGGCTCCTGAAAAGAAGAAATTGACAAATAGGACATCAGAAATGAAGAGAACAAGAAGG 189
Query 649 GACCGTAGAGAGATGGAGGAGGTGATGTTTAATCTCTTTGAAAGACAATCAAATTGGACT 708
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 190 GACCGTAGAGAGATGGAAGAGGTCATGTTTAATCTCTTTGAAAGACAGTCAAATTGGACT 249
Query 709 CTGAGGCTGCTCATTCAGGAAACTGACCAGCCAGAGCAATTCCTGAAAGACTTGTTGAAA 768
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 250 CTGAGGCTGCTCATTCAGGAAACTGACCAACCAGAGCAATTCCTGAAAGACTTGCTGAGA 309
Query 769 GATCTATGCATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAA 828
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GATCTTTGCATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAG 369
Query 829 TATAAGAAAGCCACTCAGGAATAG 852
|| ||||||||||| |||||||||
Sbjct 370 TACAAGAAAGCCACACAGGAATAG 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5