BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52270.1 Length=852 Score E Sequences producing significant alignments: (Bits) Value Ahg348323 jgi|Araly1|348323|fgenesh1_pg.C_scaffold_5001715 1086 0.0 Ahg898135 jgi|Araly1|898135|Al_scaffold_0005_2101 510 5e-144 > Ahg348323 jgi|Araly1|348323|fgenesh1_pg.C_scaffold_5001715 Length=777 Score = 1086 bits (588), Expect = 0.0 Identities = 730/796 (92%), Gaps = 20/796 (3%) Strand=Plus/Plus Query 58 ATGGAAGAT-GTAAAGGTGGAAATGAAGGTAAGGAAGAATGAGAATGAAGCGTTGGAAAC 116 ||||||||| || ||||| ||| | ||||||| |||||||||||||||||| |||||||| Sbjct 1 ATGGAAGATGGT-AAGGTAGAATTTAAGGTAAAGAAGAATGAGAATGAAGCATTGGAAAC 59 Query 117 GGGTTTGGCAGAGAGATCGATGTTGCTGATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 176 ||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 60 GGGATTAGCAGATAGATCGATGTTGCTAATGAAAGCTCCATCTCTCGTCGCGAGTTCTCT 119 Query 177 CCAATCTCATTCTTTTCCTGACGATCCGTACCGTCCTGACGATCCGTACCGTCCTGACGC 236 || | || || ||||| | | ||||||||||||||||||||||||||| Sbjct 120 CC-A-GTC--TC--TTCCT-----T---T----TCCTGACGATCCGTACCGTCCTGACGC 161 Query 237 CAAAGTCATCCTCGGCGTCGATCCTCTGGCTCACGAGGACGAAGGGACCCAATTCGTAAT 296 ||||||||||| |||||||| |||||||| ||||||||||| |||| |||||||||| Sbjct 162 TAAAGTCATCCTTAACGTCGATCTTCTGGCTCCCGAGGACGAAGAGACCAAATTCGTAAT 221 Query 297 GGAATTAGCTCGAGCTGACTCTGGAAACATGCCGAGGCGTTACACTTTGGATATGTCTAA 356 |||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| Sbjct 222 GGAATTAGCTCGAGCTGAATCTGGAAACATGCCGAGGCGTTACACCTTAGATATGTCTAA 281 Query 357 AGATTTTATTCCTATGAATGTTTTCTGTGAGTCTTCAGATGGAAAGATGTCAGTAGAAGG 416 |||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 282 AGATTTCATCCCCATGAATGTTTTCTGTGAATCTTCAGATGGAAAGATGTCAGTAGAAGG 341 Query 417 GAAGATAAAGAACAAATTTGATATGAGGCCTCATAACGAAAATATTGAAAGCTATGGGAG 476 |||||| |||||||||||||| ||||||||||||||||| || || || ||||||||||| Sbjct 342 GAAGATTAAGAACAAATTTGACATGAGGCCTCATAACGAGAACATCGAGAGCTATGGGAG 401 Query 477 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAATAGACAGATCCAGGTCATTGA 536 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 402 ATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAACAGACAGATCCAGGTCATTGA 461 Query 537 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 TAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACCGCGGCTCC 521 Query 597 GGAAAAGAAAAAATTGACGAACAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 656 |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 522 TGAAAAGAAGAAATTGACAAATAGGACATCAGAAATGAAGAGAACAAGAAGGGACCGTAG 581 Query 657 AGAGATGGAGGAGGTGATGTTTAATCTCTTTGAAAGACAATCAAATTGGACTCTGAGGCT 716 ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 582 AGAGATGGAAGAGGTCATGTTTAATCTCTTTGAAAGACAGTCAAATTGGACTCTGAGGCT 641 Query 717 GCTCATTCAGGAAACTGACCAGCCAGAGCAATTCCTGAAAGACTTGTTGAAAGATCTATG 776 |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| || Sbjct 642 GCTCATTCAGGAAACTGATCAGCCAGAGCAATTCCTGAAAGACTTGCTGAGAGATCTTTG 701 Query 777 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAATATAAGAA 836 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 702 CATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAGTACAAGAA 761 Query 837 AGCCACTCAGGAATAG 852 |||||| ||||||||| Sbjct 762 AGCCACACAGGAATAG 777 > Ahg898135 jgi|Araly1|898135|Al_scaffold_0005_2101 Length=393 Score = 510 bits (276), Expect = 5e-144 Identities = 308/324 (95%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 529 GTCATTGATAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACC 588 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 70 GTCATTGATGATGCCAGAGGAATGCATATGAGGCCAATGCCAGAAATGATAATCCCAACC 129 Query 589 GCGGCTCCGGAAAAGAAAAAATTGACGAACAGGACATCAGAAATGAAGAGAACAAGAAGG 648 |||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 130 GCGGCTCCTGAAAAGAAGAAATTGACAAATAGGACATCAGAAATGAAGAGAACAAGAAGG 189 Query 649 GACCGTAGAGAGATGGAGGAGGTGATGTTTAATCTCTTTGAAAGACAATCAAATTGGACT 708 ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct 190 GACCGTAGAGAGATGGAAGAGGTCATGTTTAATCTCTTTGAAAGACAGTCAAATTGGACT 249 Query 709 CTGAGGCTGCTCATTCAGGAAACTGACCAGCCAGAGCAATTCCTGAAAGACTTGTTGAAA 768 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | Sbjct 250 CTGAGGCTGCTCATTCAGGAAACTGACCAACCAGAGCAATTCCTGAAAGACTTGCTGAGA 309 Query 769 GATCTATGCATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAA 828 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GATCTTTGCATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAG 369 Query 829 TATAAGAAAGCCACTCAGGAATAG 852 || ||||||||||| ||||||||| Sbjct 370 TACAAGAAAGCCACACAGGAATAG 393 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31527652359 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5