BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52280.2
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485593 jgi|Araly1|485593|fgenesh2_kg.5__1585__AT3G52280.1 1609 0.0
> Ahg485593 jgi|Araly1|485593|fgenesh2_kg.5__1585__AT3G52280.1
Length=1116
Score = 1609 bits (871), Expect = 0.0
Identities = 962/1006 (96%), Gaps = 5/1006 (0%)
Strand=Plus/Plus
Query 253 ATT-GCTTGAGCATAAACTGAAAGAAGTGGAGGAGTTTTACTCGAGCATTGGTGTCTCAA 311
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 113 ATTCGCTTGAGCATAAACTGAAAGAAGTAGAGGAGTTTTACTCGAGCATTGGTGTCTCAA 172
Query 312 ACTCTGGCTCTATTGGTAAAGATACAGAAAAAGGGAGACATGTTGTGGGGATTAGGAAGA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ACTCTGGCTCTATTGGTAAAGATACAGAAAAAGGGAGACATGTTGTGGGGATTAGGAAGA 232
Query 372 TTCAACAAGAGGCTGCGCGTAGAGAAGCTGTTGCTGCTAAAAGAATGCAGGACCTTATGC 431
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TTCAACAAGAGGCGGCGCGTAGAGAAGCTGTTGCTGCTAAAAGAATGCAGGACCTTATGC 292
Query 432 GTCAATTTGGAACAATCTTTCGTCAGATAACTCAGCATAAGTGCGCTTGGCCGTTTATGC 491
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 293 GTCAATTTGGAACAATCTTTCGTCAGATAACTCAGCATAAGTGTGCATGGCCGTTTATGC 352
Query 492 ATCCTGTCAATGTTGAAGGTCTTGGTTTGCATGACTACTTTGAGGTTATTGACAAGCCTA 551
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 353 ATCCTGTCAATGTAGAAGGTCTTGGTTTGCATGACTACTTTGAGGTTATTGACAAGCCCA 412
Query 552 TGGACTTCAGCACGATAAAAAATCAAATGGAGGCTAAGGATGGTACCGGGTACAAACATG 611
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 413 TGGACTTCAGCACGATAAAGAATCAAATGGAGGCTAAGGATGGTACTGGGTACAAACATG 472
Query 612 TCATGCAAATTTATGCTGATATGCGGCTAGTGTTTGAGAACGCAATGAATTATAATGAAG 671
|| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 473 TCCTGCAAGTATATGCTGATATGCGGCTAGTGTTTGAGAACGCAATGGATTATAATGAAG 532
Query 672 AAACAAGTGATGTTTACTCTATGGCGAAAAAGTTACTGGAAAAGTTTGAGGAGAAGTGGG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 533 AAACAAGTGATGTTTACTCTATGGCGAAAAAGTTACTGGAAAAGTTTGAGGAGAAATGGG 592
Query 732 CACACTTTCTTCCAAAGGTTCAAGAAGAGGAGAAAATACGAGAGGAAGAGGAGAAGCAAG 791
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 CACACTTTCTTCCAAAGGTTCAAGAAGAGGAGAAAATACGGGAGGAAGAGGAGAAGCAAG 652
Query 792 CAGCAAAGGAGGCGCTGCTAGCAAAAGAAGCATCTCATATCAAAACAACTAGAGAATTGG 851
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CAGCAACGGAGGCGCTGCTAGCAAAAGAAGCATCTCATATCAAAACAACTAGAGAATTGG 712
Query 852 GGAATGAGATTTGCCATGCTAATGACGAGCTGGAGAAGCTAATGCGTAAAGTTGTGGAAA 911
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GCAACGAGATTTGCCATGCTAATGACGAGCTGGAGAAGCTAATGCGTAAAGTTGTGGAAA 772
Query 912 GATGCAGGAAAATCACAATTGAGGAGAAGCGTAATATTGGATTGGCATTGTTAAAACTGT 971
|||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||
Sbjct 773 GATGCAGGAAAATCACAATTGAGGAGAAACGTAATATTGGGTTGGCATTATTAAAATTGT 832
Query 972 CACCGGATGATCTACAGAAAGTGTTGGGTATAGTTGCTCAGGCTAACCCGAGCTTTCAAC 1031
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 833 CACCGGATGATCTACAGAAAGTGTTGGGTATAGTTGCTCAGGCTGACCCGAGCTTCCAAC 892
Query 1032 CTAGAGCAGAGGAAGTTAGTATTGAGATGGACATACTGGACGAACCAACACTATGGAGGC 1091
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CTAGAGCAGAGGAAGTGAGTATTGAGATGGACATACTGGACGAACCAACACTATGGAGGC 952
Query 1092 TAAAGTTCTTTGTGAAGGATGCGTTGGATAATGCAATgaagaagaagaaagaagaggaga 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 953 TAAAGTTCTTTGTGAAGGATGCGTTGGATAATGCAATGAAGAAGAAGAAAGAGGAAGAGA 1012
Query 1152 caaagactagagaattgagtgg-agcacaaaagaaagagGTTTCGAAGAAACGAAATGCG 1210
|||||||| ||| |||| ||| | ||||||| |||| || ||| || ||||||||||||
Sbjct 1013 CAAAGACTGGAGCTTTGAATGGGA-CACAAAACAAAGTGGCTTCCAACAAACGAAATGCG 1071
Query 1211 ACTACA-AAGTTAGCTGAGAGGAAAACGAAGCGGTCACGCATATGA 1255
|||| | |||||||||||||| ||||| ||||||||||| |||||
Sbjct 1072 ACTA-ATAAGTTAGCTGAGAGAAAAACCAAGCGGTCACGTGTATGA 1116
Score = 126 bits (68), Expect = 4e-28
Identities = 92/102 (90%), Gaps = 7/102 (7%)
Strand=Plus/Plus
Query 95 ATGGCTGACTCAGTGCC------AGGTCATGTCGCCGGCGGAGGTTTACAGGGTTTCTCT 148
||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||
Sbjct 1 ATGGCTGACTCAGTGCCAGAGTTAGGTCAAGTCGCCGGCCGAGGTTTACAGGTTTTCTCT 60
Query 149 GTCGACGCCGAGTGCATCAAGCAGCGTGTCGACGAGGGTTTT 190
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GTCGACGCCGAGTGCATCAAGCAGCGTGTCGACGAGG-TTTT 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5