BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52290.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485594 jgi|Araly1|485594|fgenesh2_kg.5__1586__AT3G52290.1 2519 0.0
> Ahg485594 jgi|Araly1|485594|fgenesh2_kg.5__1586__AT3G52290.1
Length=1805
Score = 2519 bits (1364), Expect = 0.0
Identities = 1707/1860 (92%), Gaps = 73/1860 (4%)
Strand=Plus/Plus
Query 1 GGACCCCTTCTTCTTCAAGATCTGTTTCTTCCTTCTTTCTCTCTAACCAGATTTTGTTGT 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1 GGACCTCTTCTTCTTCAAGATCTGTTTCTTCCTTCTTTCTCTCT-ACCAGATTTTCTTGT 59
Query 61 ACCagagagagagagagagagaTCCCTTAATAATTCTTACACATTTATCTTTCTTGTCTG 120
||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 ACC----------AGAGAGAGATCCCTTAATCATTCTTACACATTTATCTTTCTTGTCTG 109
Query 121 AATCCTAACAAAGACTTTAGTTTTGGTCGATCTTATAA----TTTTCt-ttttttATTCT 175
||||||||||||||||| | ||||||||| ||||| || |||| | |||||||||||
Sbjct 110 AATCCTAACAAAGACTTAACTTTTGGTCGTTCTTAGAATTTTTTTTTTATTTTTTATTCT 169
Query 176 ATGGATTTCTCTTCCGGGTTTCAATAATTGTCACTTCCGTAGTATTCTG-CAAAGGtttt 234
||||||||||||||||||||||||||||||||||||| ||| | | | ||| |||
Sbjct 170 TTGGATTTCTCTTCCGGGTTTCAATAATTGTCACTTCCCAAGT-GTAAGTTACAGGGTTT 228
Query 235 ggttttttctccgagtttttttGTCCTTCaaaaaaaaCTTTGGTTGCTCTCTCTCTGTTC 294
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 229 GGTTTTTTCTCCGAGTTTTTTTGTCCTTCAAAAAAAACTTTGGTTG--CTCTCTCTGTTC 286
Query 295 AAGAAGATCCGAGCTTGATTCCTAATCTATCATTTGAGAAGAAGAAACTAAGAAATGGGT 354
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct 287 AAGAAGATCCGAGCTTGATTTCTAATCTTTCATTTGAAAAGAAGAAACTAAGAAATGGGT 346
Query 355 AAGAGTTGGTTTTCAGCTGTGAAGAAAGCATTAAGCCCAGAACCAAAACAAAAGAAAGAG 414
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 347 AAAAGTTGGTTTTCAGCTGTGAAGAAAGCCTTAAGTCCAGAACCAAAACAAAAGAAAGAT 406
Query 415 CAGAAGCCACATAAGTCCAAGAAATGGTTTGGTAAATCCAAGAAGCTAGATGTTACTAAT 474
||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 407 CAGAAGCCACATAAGGCCAAGAAATGGTTTGGTAAATCCAAGAAGTTGGATGTTACCAAT 466
Query 475 TCTGGTGCAGCATATTCTCCTCGTACTGTCAAAGACGCGAAACTAAAGGAGATTGAGGAG 534
||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 467 TCTGGTGAAGCAGATTCTCCTCGTACTGTCAAAGACGCAAAACTTAAGGAGATTGAGGAG 526
Query 535 CAACAGAGCAGACATGCTTACTCTGTGGCTATTGCAACTGCTGCAGCTGCAGAGGCAGCC 594
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 527 CAGCAGAGCAGACATGCTTACTCTGTGGCTATTGCAACTGCTGCAGCTGCTGAGGCAGCC 586
Query 595 GTTGCAGCTGCTCAAGCTGCTGCTGAAGTTGTTCGTCTCTCTGCATTATCACGGTTCCCC 654
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 587 GTTGCTGCTGCTCAAGCTGCTGCTGAAGTTGTTCGTCTCGCTGCATTATCACGTTTCCCC 646
Query 655 GGGAAATCAATGGAAGAGATCGCCGCTATCAAGATTCAGACAGCATTTAGAGGATATATG 714
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GGGAAATCAAAGGAAGAGATCGCCGCTATCAAGATTCAGACAGCATTTAGAGGATATATG 706
Query 715 GCAAGAAGAGCATTGCGTGCGTTGAGAGGTCTTGTGAGGCTAAAATCTTTAGTCCAGGGG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GCAAGAAGAGCATTGCGTGCGTTGAGAGGTCTTGTGAGGCTAAAATCTTTAGTCCAGGGG 766
Query 775 AAATGTGTGAGACGTCAAGCCACATCTACATTGCAAAGCATGCAAACACTAGCTAGAGTA 834
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 767 AAATGTGTGAGACGTCAAGCCACGTCAACATTGCAAAGCATGCAAACACTAGCTAGAGTA 826
Query 835 CAATATCAGATTCGTGAGAGAAGGCTCCGATTGTCTGAGGATAAACAGGCTTTAACACGA 894
|||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 827 CAATATCAGATTCGTGAGAGGAGGCACCGATTGTCTGAGGATAAGCAGGCTTTAACACGG 886
Query 895 CAGCTCCAACAAAAACACAATAAAGACTTTGATAAGACTGGAGAAAATTGGAATGATAGT 954
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 887 CAGCTCCAACAAAAACACAAAAAAGATTTTGATAAGACTGGAGAAAATTGGAATGATAGT 946
Query 955 ACATTGTCGCGGGAGAAAGTTGAAGCAAACATGTTGAACAAGCAAGTAGCAACAATGAGA 1014
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ACCCTGTCGCGGGAGAAAGTTGAAGCAAACATGTTGAACAAGCAAGTAGCAACAATGAGA 1006
Query 1015 AGAGAAAAAGCGCTTGCATATGCATTCA-GTCACCAGAATACATGGAAAAACTCAACTAA 1073
||||| | |||||||||||| || |||| | || |||||||| |||||||||||| ||||
Sbjct 1007 AGAGAGAGAGCGCTTGCATACGCCTTCACG-CATCAGAATACGTGGAAAAACTCATCTAA 1065
Query 1074 AATGGGTTCTCAAACATTCATGGACCCTAACAATCCGCATTGGGGTTGGAGTTGGCTAGA 1133
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1066 AATGGGTTCTCAGACATTCATGGACCCTAACAATCCACATTGGGGTTGGAGTTGGCTCGA 1125
Query 1134 ACGTTGGATGGCTGCTCGACCAAACGAAAACCA--C--TCA--CTCACACCAGATAATGC 1187
|||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||
Sbjct 1126 ACGTTGGATGGCTGCTCGACCAAATGAAAACCAGTCAGTCATACTCACACCAGATAATGC 1185
Query 1188 TGAAAAAGACTCTTCTGCTAGGAGTGTAGCAAGCCGTGCCATGTCTGAGATGATTCCACG 1247
||| ||||| |||||| || | || | |||||||||||||| |||| ||
Sbjct 1186 TGACAAAGAGTCTTCT---AGC-------C--GC-G--CCATGTCTGAGATGGTTCCCCG 1230
Query 1248 AGGCAAAAACCTTTCACCAAGAGGAAAGACACCAAACAGTCGAAGAGGGTCAAGCCCGAG 1307
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1231 TGGCAAAAACCTTTCAGCAAGAGGAAAGACACCAAATAGTCGAAGAGGGTCAAGCCCTAG 1290
Query 1308 AGTGAGGCAAGTCCCAAGTGAAGACTCAAACAGCATTGT-GAGT-TTCCAATCAGAACAA 1365
|||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||
Sbjct 1291 AGTGAGGCAAGTCCCAAGTGAAGACTCAAACAGCAT-GTTGAGTATTC-AATCAGAACAA 1348
Query 1366 CCTTGCAATCGTAGGCATAGCACTTGTGGATCAATTCCATCAACTAGAGACGATGAAAGC 1425
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CCTTGCAACCGTAGGCATAGCACTTGTGGATCAATTCCATCAACTAGAGACGATGAAAGC 1408
Query 1426 TTCACCAGTAGTTTCTCTCAGTCAGTTCCAGGCTACATGGCACCTACACAAGCCGCCAAA 1485
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1409 TTCACCAGTAGTTTCTCTCAGTCAGTTCCAGGCTACATGGCGCCTACACAAGCCGCCAAA 1468
Query 1486 GCAAGAGCTCGATTCTCAAACCTTAGTCCTCTAAGCTCAGAGAAGACAGCGAAAAAACGG 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 GCAAGAGCTCGATTCTCAAACCTTAGTCCTCTAAGCTCAGAGAAGACAGCGAAAAAACGG 1528
Query 1546 CTTTCCTTCTCGGGATCTCCTAAGACTGTAAGACGGTTTTCAGGTCCACCAAAGCTGGAA 1605
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1529 CTTTGCTTCTCGGGATCTCCTAAGACTGTAAGACGGTTTTCAGGTCCACCGAAGCTGGAG 1588
Query 1606 AGCAATGTTACTAAGAAAGATACTAATCTTGCTTAAACAGAG-AATGGatatatatatat 1664
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1589 AGCAATCTTACTAAGAAAGATACTAATCTTGCTTAAGCAGAGGAATGGATATATA----- 1643
Query 1665 aGTTTATATCTGACATTGTTGATTAGGCAAAAGTCTGGTGCAGAGGTGAATTCAGAGAAG 1724
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 -GTTTATATATGACATTGTTGATTAGGCAAAAGTCTGGTGCAGAGGTGAATTCAGAGAAG 1702
Query 1725 ATTCTGTTATGTCtttgtttgtttttttggtatttttttttACTACAACAAACTTAATTA 1784
|||||||||||| ||||||| |||| | | | ||||||| | ||||||||
Sbjct 1703 ATTCTGTTATGTATTTGTTT-TTTT---G--ACT-------ACTACAA-A--CTTAATTA 1746
Query 1785 TTTGTTTGACTTT-TTT-AATTGGTTGAACATATTTGTATTGATGAAGAGACATATATAA 1842
||||||||| ||| ||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1747 TTTGTTTGATTTTGTTTTAATTGGTT-AACATATTTGTATTGATGAAGAGACAAATATAA 1805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5