BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52300.1
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485596 jgi|Araly1|485596|fgenesh2_kg.5__1588__AT3G52300.1 1334 0.0
> Ahg485596 jgi|Araly1|485596|fgenesh2_kg.5__1588__AT3G52300.1
Length=889
Score = 1334 bits (722), Expect = 0.0
Identities = 847/901 (94%), Gaps = 33/901 (4%)
Strand=Plus/Plus
Query 1 AGGGATTCTAGGGCTTTCCTTCATTGGTCAGATCAGACGACGTTTTACATCTTCTTCTTC 60
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 1 AGGGATTCTAGGGCTTTCCTTCATTGGTCGGATCAGACGACGTTTT-TA-CTTCTTCTTC 58
Query 61 TTCCTCTTCGATATTCGTCAGTGTGTGTATTTTGGGG-AAAACTTTGTGAGCAAAGAGCG 119
| |||||| |||||||| ||||||||||||||| |||| ||||||||| |||| ||
Sbjct 59 -T--TCTTCG-CATTCGTCA--GTGTGTATTTTGGGGTAAAA-TTTGTGAGCGAAGATCG 111
Query 120 AG-AAAATGAGCGGAGCCGGTAAGAAAATCGCGGATGTGGCTTTCAAAGCTTCAAGGACT 178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AGAAAAATGAGCGGAGCCGGTAAGAAAATCGCGGATGTGGCTTTCAAAGCTTCAAGGACT 171
Query 179 ATCGATTGGGATGGTATGGCTAAGGTCCTTGTCACAGATGAGGCTCGTAGAGAGTTCTCT 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 172 ATCGATTGGGATGGTATGGCTAAGGTCCTTGTCACCGATGAGGCTCGTAGAGAGTTCTCT 231
Query 239 AACCTTCGTCGTGCTTTCGATGAGGTTAACACACAGCTCCAGACCAAATTTAGTCAGGAA 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 232 AACCTTCGTCGTGCTTTCGATGAGGTTAACACGCAGCTCCAGACCAAATTTAGTCAGGAA 291
Query 299 CCTGAACCTATAGATTGGGATTACTATAGGAAGGGTATTGGAGCTGGCATTGTTGACAAG 358
|||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 292 CCTGAACCCATAGATTGGGATTTCTACAGGAAGGGTATTGGAGCTGGCATTGTTGACAAG 351
Query 359 TACAAGGAAGCTTATGACAGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TACAAGGAAGCTTATGACAGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAA 411
Query 419 TACAAGCCAAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAA-CAGAAATCGCT 477
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 412 TACAAGCCAAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAAGC-GAAATCGCT 470
Query 478 -CAAGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCAAAAAGC 536
|| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 471 TCA-GGAGTCTGAACGGTTGGAGAAAGAAATTGCTGACGTCCAAGAGATTAGCAAAAAGC 529
Query 537 TCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAACTCAAAAAGAAGTTTG 596
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 530 TCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCAGAACTCAAAAAGAAGTTTG 589
Query 597 ATGACGAAATCCGTAATGACAACTGGGGATACTGATCATGTTTCTCCATCTCCGGCTTGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 590 ATGACGAAATCCGTAATGACAACTGGGGATACTGATCATGTTTCTCCATCTCCAGCCTGG 649
Query 657 AA-AGAAAACTCTCTTTCTCTTTCTCT------GTTCTCTTACTGTGATTTTGTGAGCCA 709
|| | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 650 AACA-AAAACTCTCTTTCTCTTTCTCTTTCTCTGTTCTCTTACTGTGATTTTGTGAGCCA 708
Query 710 ATCATAACAATAATAAGTACACCATTCACTTAAGCAGTGTTGAGATCTTCATTCCAAGGA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ATCATAACAATAATAAGTACACCATTCACTTAAGCAGTGTTGAGATCTTCATTCCAAGGA 768
Query 770 AGATAAACGCATTTGGTTTTAGTTATCAATTTCACAAATTGTTTCGTTTCGTTCTTCAGT 829
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 769 AGATAAACCCATTTGGTTTTAGTTATCAATTTCATAAATTGTTTCGTTTCGTTCTACAGT 828
Query 830 GAATAATAAGAGTCaaaa-a----a--a-TT--ATCATTGTCAAGGAATGAAGAAGACTC 879
||||||||||||| |||| | | | || ||| ||||||||||||||||||| |||
Sbjct 829 GAATAATAAGAGTGAAAAGATCTCATCAATTTTATCGTTGTCAAGGAATGAAGAAGGCTC 888
Query 880 T 880
|
Sbjct 889 T 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32938200288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5