BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52320.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898140 jgi|Araly1|898140|Al_scaffold_0005_2106 1210 0.0
Ahg921331 jgi|Araly1|921331|scaffold_102612.1 156 4e-37
Ahg314261 jgi|Araly1|314261|fgenesh1_pm.C_scaffold_1003041 80.5 3e-14
Ahg905355 jgi|Araly1|905355|Al_scaffold_0003_2483 78.7 9e-14
> Ahg898140 jgi|Araly1|898140|Al_scaffold_0005_2106
Length=1002
Score = 1210 bits (655), Expect = 0.0
Identities = 896/1009 (89%), Gaps = 30/1009 (3%)
Strand=Plus/Plus
Query 1 ATGGGCTCGTCTTTATGTGTTGCCGTGAGGAAAAAGGAAAAGCAGAAGCAGAAGAAGACC 60
||||| ||||||||| || ||| ||||||| | ||||| | ||| ||||||||||
Sbjct 1 ATGGGATCGTCTTTAAGTCTTGTCGTGAGG----A--AAAAG-A-AAG-AGAAGAAGACT 51
Query 61 GTGGTGTTCTTACCAGAGATCCCTGAAGAAATGTTGATCGATATCCTAATCAGATTGCCG 120
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 52 TTGGTGATCTTACCAGAGATCACTGAAGAAATGTTGATCGATATCCTAATCAGATTGCCG 111
Query 121 GCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGGCTTTCCCTTATCACCTCT 180
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 112 GCGAAATCTCTGATGAGATTTAAGTGTGTCTCAAAGATCTGGCTTTCCCTTATCACCTCT 171
Query 181 CGATACTTCACCAACCGTTTC-T--TTAAACCCTCATCACCAAGTTGTTTGTTCGCGTAT 237
||||||||| ||||||||||| | ||||||| ||| || || ||||||| |||||||||
Sbjct 172 CGATACTTCGCCAACCGTTTCCTAATTAAACCTTCACCATCACGTTGTTTTTTCGCGTAT 231
Query 238 CTTGTGGACAGGGAAAATCAGAGCAAA-TACCTGTTGCTCCAATCATCATCGTCATCGAG 296
|||||||| | ||||||||||| ||| | |||||||| |||||||||| ||||||
Sbjct 232 CTTGTGGATTGTGAAAATCAGAG-AAAGTGTTTGTTGCTCAAATCATCATC---ATCGAG 287
Query 297 GCATGATCACTCGGACACATCTGTCTCTGTGATTGACCAACATTCGACCATACCGATAAT 356
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 288 TCATGATCACTCGGACATATCTGTCTCTGTGATTGACCAACATTCGACCATGCCGGTAAT 347
Query 357 GGGAGGCTACTTAGTGAACGCTGCTCGTGGTTTGTTGTGTTACAGAACTGGGAGAAGAGT 416
|||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 348 GGGAGGCTACTTCGTGAACTCTGTTCGTGGTTTGTTGTGTTACAGAACTAGGAGAAGAGT 407
Query 417 GAAAGTTTGTAACCCTAGCACAAGGCAGATTGTGGAATTGCCCATAATGAGATCTAAGAC 476
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
Sbjct 408 GAAAGTTTGTAACCCTAGCACAAGGCAGGTTGTGGAATTTCCCCTAATGAGATCTAC--C 465
Query 477 TAATGTGTGGAATTGGTTTGGACATGATCCTTTTCATGATGAATACAAAGTGCTTAGCTT 536
||||||||| |||| |||| ||| |||||| |||||||| |||| ||||||||||||||
Sbjct 466 -AATGTGTGGCATTGTTTTGAACACGATCCTGTTCATGATAAATATAAAGTGCTTAGCTT 524
Query 537 ATTTTGGGAGGTCACCAAGGAACAGACAGTTGTGAGATCAGAACATCAAGTGTTGGTACT 596
| |||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 525 AGTTTGGGAGGTCAACAAGGAAGAGAGAGTAGTGAGATCAGAACATCAAGTGTTGGTACT 584
Query 597 TGGTGTTGGAGCTTCATGGAGAAACACTAAAAGCCAC--C-ACACTCCTCATCGTCCTTT 653
||||| ||||||| |||||||||||||| |||||||| | ||||||||||| |||||||
Sbjct 585 TGGTGATGGAGCTACATGGAGAAACACTCAAAGCCACAACGACACTCCTCATGGTCCTTT 644
Query 654 TCATCCATACTCACGAGGGATGACTATTGATGGTGTTTTGTATTATAGT-GCTCGGACTG 712
| | ||| |||| | ||||||||||||| | |||||||||||||||| | ||| ||||||
Sbjct 645 TTACCCACACTCGCAAGGGATGACTATTAACGGTGTTTTGTATTATA-TAGCTTGGACTG 703
Query 713 ATGCAA-ATAGATGTGTCCTTATGAGTTTTGACTTAAGTTCTGAAGAGTTCAATTTGATT 771
||| || ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 704 ATG-AAGATAGAGGTGTGCTTGTGAGTTTTGACTTGAGTTCTGAAGAGTTCAATTTGATT 762
Query 772 GAATTA---CCCTTTGAGAACTGGTCACGCACCATTCACATGAACTACCAAGGAAAAGTT 828
|||||| |||| |||||||| |||| |||||| || || ||||||||||||||||||
Sbjct 763 GAATTATTGCCCTATGAGAACTTGTCATGCACCAGTCTGATTAACTACCAAGGAAAAGTT 822
Query 829 GCTACTTGTCAATATATGCGTCTTGCAAGTGATGGCTTTGTGGATGTTTGTGTCCTTGAA 888
||||||||| || ||| || |||| ||||||||||| |||||||||||||||| ||||||
Sbjct 823 GCTACTTGTGAAGATACGCTTCTTTCAAGTGATGGCATTGTGGATGTTTGTGTTCTTGAA 882
Query 889 GATGCCGACAAGAGTCAGTGGTCGAACAAGAAGACTTTTGTTTTGCCTATTTCTCAGATG 948
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 883 GATGCCGACAAGAGTCAGTGGTCGAACAAGAAGACTTTTGTTTTGCCTGTTTCTCAGATG 942
Query 949 AATTTCGTCCATGGAGACCGGTTGGTGGTGGGTGCCTCTAGAGACAGTG 997
||||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct 943 AATTTCGTCCATGGAGACCGGTTGGTGATTGGTGGCACTAGAGACAGTG 991
> Ahg921331 jgi|Araly1|921331|scaffold_102612.1
Length=243
Score = 156 bits (84), Expect = 4e-37
Identities = 132/155 (85%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 109 ATCAGATTGCCGGCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGGCTTTCC 168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 67 ATCAGATTGCCGGCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGGCTCTCA 126
Query 169 CTTATCACCTCTCGATACTTCACCAACCGTTTCTTTAAACCCTCATCACCAAGTTGTT-T 227
|| ||| ||||| ||||| |||||||| ||| ||||||||||| ||| |||| ||| |
Sbjct 127 CTCATCTTATCTCGTTACTTGACCAACCGATTCCTTAAACCCTCACCACGAAGTCGTTAT 186
Query 228 GTTCGCGTATCTTGTGGACAGGGA-AAATCAGAGC 261
| ||| ||| ||||||| || || ||| || |||
Sbjct 187 CT-CGCCTATTTTGTGGATAGCGAGAAA-CATAGC 219
> Ahg314261 jgi|Araly1|314261|fgenesh1_pm.C_scaffold_1003041
Length=1113
Score = 80.5 bits (43), Expect = 3e-14
Identities = 79/96 (82%), Gaps = 4/96 (4%)
Strand=Plus/Plus
Query 112 AGATTGCCGGCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGG-CTTTCCCT 170
|||||||| | ||| | || |||||||||||||||||||||||||||||| | | | ||
Sbjct 28 AGATTGCCTTCTAAAACCCTAATGAGATTCAAGTGCGTCTCAAAGCTCTGGTCAT-CTCT 86
Query 171 TATC-ACCTCTCGATACTTCACCAACCGTTTCTTTA 205
||| || |||| |||||| |||| ||||||| |||
Sbjct 87 CATCCAC-TCTCCATACTTGACCAGCCGTTTCCTTA 121
> Ahg905355 jgi|Araly1|905355|Al_scaffold_0003_2483
Length=483
Score = 78.7 bits (42), Expect = 9e-14
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 721 AGATGTGTCCTTATGAGTTTTGACTT-AAGTTCTGAAGAGTTCAATTTGATTGAATTACC 779
|||||||| | || ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 AGATGTGTGGTCATTAGTTTTGACTTGAA-TTCTGAAGAGTTCAATTTGATTGAATTACC 59
Query 780 C 780
|
Sbjct 60 C 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5