BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52330.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898142 jgi|Araly1|898142|Al_scaffold_0005_2108 1186 0.0
> Ahg898142 jgi|Araly1|898142|Al_scaffold_0005_2108
Length=852
Score = 1186 bits (642), Expect = 0.0
Identities = 785/852 (92%), Gaps = 18/852 (2%)
Strand=Plus/Plus
Query 85 TCGTCTTTAG-GTCTTGCCGTGAGGAAAAAGCAAAAGAAGGAGAGAATAGTGGTCGTACC 143
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 7 TCGTCTTT-GAGTCTTGCCGTGAGGAAAAAGCAAAAGAAGGAGAGAATAATGGTCTTACC 65
Query 144 CGAACTCTGTGAGGAATTGTTGACCGAGATTCTGAGCAGATTACCGA-GCAAT-TATG-- 199
|||||||| |||||| ||||||| ||||||||||| ||||||||||| | ||| | ||
Sbjct 66 CGAACTCTATGAGGACTTGTTGATCGAGATTCTGATCAGATTACCGATG-AATCT-TGCT 123
Query 200 CGTTGCTTACTACATCATTGAGTCATGATGATCACTCTGTCTCTGTAATCGACCAAGATC 259
| | | | | | ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 124 CATCACGT-CGA-ATCATCGAGTCATGATGATCACTCTGTCTCTGTGATCGACCAAGATC 181
Query 260 TAACCATGCCGATAATGGGAGGCTACTTCTTGAACGCTTGTCGTGGCTTGGTGTGTTTCA 319
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TAAGCATGCCGATAATGGGAGGCTACTTCTTGAACGCTTGTCGTGGCTTGGTGTGTTTCA 241
Query 320 CAATTGGGTCAAGAGTGCAAATTTGTAACCTTAACACAAGGCAGCTTGTGGACTTGCCGA 379
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 242 CAGTTGGGTCAAGAGTGCAAATTTGTAACCTTAACACAAGGCAGCTTGTGGAATTGCCGA 301
Query 380 TTATTCTAACACCTAAAGGAGGAGAAAATTACAAGATATGGTACTATTTAGGACACGATC 439
|||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 302 TTATTCTAACACCTCAAGGAGGAGAAGATTACAATATATGGTACTATTTAGGACACGATC 361
Query 440 CTGTTCATGACGAATACAAAGTGCTTAGTTTCATTTGGAGGCACAACAAGGAG---TGGA 496
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 362 CTGTTCATGACGAATACAAAGTGCTTAGTTTCATTTGGAGGCACAATAGGGAGCAGTGGA 421
Query 497 AAGTGAGATCAGAACATCATGTGTTGGTACTTGGAGCTAGAACTTCATGGAAAAAGACTC 556
||||||||||||||||||| || ||| ||||||||||| || ||||||||||||||||||
Sbjct 422 AAGTGAGATCAGAACATCAGGTATTGATACTTGGAGCTGGAGCTTCATGGAAAAAGACTC 481
Query 557 AATGCCACATTCACCATCTTCCTTATTCTCAAGGGATTACCATCAACGGTGTTTTGTATT 616
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 482 AATGCCACATTCACCATTTTCCTTATTGTCAAGGGATTACCATCAACAGTGTTTTGTACT 541
Query 617 ATGGAGCTTGGACTGATGACAAG---TGTGTGCTTATGAGTTTTGACTTGACTTCTGAAG 673
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 542 ATGGAGCTTGGACTGATGACAAGAAATGTGTGCTTATGAGTTTTGACTTGAGTTCTGAAG 601
Query 674 ATGTGGGTGTTTGGGTAATTGAAGATGTCAACAAGAGTCAATGGTCAGACAAGGAGACTT 733
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 602 ATGTGCGTGTTTGGGTAATTGAAGATGTCAACAAGAGTCAATGGTCACACAAGAAGACTT 661
Query 734 TTGTTTTGCCTACAGATTTCCCCCACGAC-TATGGCTTTATGATGGGTGGCACAGGTCGC 792
|||||||||||||||||||| | || ||| |||| |||| |||||||||||||||||| |
Sbjct 662 TTGTTTTGCCTACAGATTTCGCTCA-GACATATGACTTTGTGATGGGTGGCACAGGTCAC 720
Query 793 AGTGGTAAGGGTAATGAGATAACTCGAAAGATCCAAATAAGTCCATCATTACTTGGTAGC 852
||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 AGTGGCAAAGGTAATGAGATAACTCGAAAGATTGAAATAAGTCCATCATTACTTGGTAGC 780
Query 853 TTTAAACAGACTGATTCCTTGTTGGCTACTTTATGGGATGATACTGAGAGCATCATGTAC 912
|||||||||||||||| |||||| ||||| | ||||||||||| |||||||||||||||
Sbjct 781 TTTAAACAGACTGATTTGTTGTTGCCTACTCTCTGGGATGATACCGAGAGCATCATGTAC 840
Query 913 TTGGAAACCTAA 924
||||||||||||
Sbjct 841 TTGGAAACCTAA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5