BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52340.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485599 jgi|Araly1|485599|fgenesh2_kg.5__1591__AT3G52340.3 2117 0.0
> Ahg485599 jgi|Araly1|485599|fgenesh2_kg.5__1591__AT3G52340.3
Length=1548
Score = 2117 bits (1146), Expect = 0.0
Identities = 1278/1341 (95%), Gaps = 11/1341 (1%)
Strand=Plus/Plus
Query 139 TAACCATGGAGCGGCTGATTTCTCATCCTCCTCTCATGATCGTCTCAGACCTTGATCACA 198
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 212 TAACCATGGAGCGGCTGATTTCTCATCCTCCTCTCATGATTGTCTCAGACCTTGATCACA 271
Query 199 CCATGGTTGATCATCAAGATCATGAGAACCTCTCTCTTCTCAGGTTCAATTCATTGTGGG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CCATGGTTGATCATCAAGATCATGAGAACCTCTCTCTTCTCAGGTTCAATTCATTGTGGG 331
Query 259 AATACGCTTATCGCCGTGACTCTCTTCTTGTCTTCTCTACAGCAAGATCACCTGTTCTTT 318
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 332 AATACGCTTATCGCCGTGACTCTCTTCTTGTCTTCTCTACTGCAAGATCACCAATTCTTT 391
Query 319 ATAAAGAATTGAGAAAAGAGAAACCTTTGTTGACTCCTGATATCATTATTACATCAATAG 378
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 392 ATAAAGAATTGAGAAAAGAGAAACCTTTGTTGACTCCTGATATCACCATTACATCAATAG 451
Query 379 GAACTGAGATAGCATTTGGTAACTCCATGGTTCCTGATCATGCTTGGGTTGAATCCTTGA 438
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 452 GAACCGAGATAGCATTTGGTAACTCCATGGTTGCTGATCATGCTTGGGTTGAATCCTTGA 511
Query 439 ACAGCTG-TAAATGGAACCGGGAAATAGTCTTGGAAGAAACTAGCAAGTTCCCTGAGTTA 497
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 ACA-CCGATAAATGGAACCGGGAAATAGTCTTGGAAGAAACTAGCAAGTTCCCTGAGTTA 570
Query 498 ACTCTTCAGCCAAAAACTGAGCAGAGGCTACACAAGGTCAGCTTTTACATTGATGAAGGT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 ACTCTTCAGCCAAAAACTGAGCAGAGGCTACACAAGGTCAGCTTTTACATTGATGAAGGT 630
Query 558 AAAGGTGAGGCATTGACCAAGGAACTATCACAATTGCTGGAGAAACGTGGCTTGGATGTC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AAAGGTGAGGCATTGACCAAGGAACTATCACAATTGCTGGAGAAACGTGGCTTGGATGTC 690
Query 618 AAGATAATTTACAGTTGGGGAAAGAATGTCGATGTTATACCGCGTGGTGCAGGAAAAGGA 677
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 691 AAGATAATTTACAGTTGGGGAAAGAATGTGGATGTTATACCGCGAGGTGCTGGAAAAGGA 750
Query 678 GAAGCGCTTGAGTATCTTCTCAAGAAGCTGCAGGCTGAAGGAATATTCCCGGTCAATACT 737
||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 751 GAAGCCCTCGAGTATCTTCTCAAGAAGCTGCAGGCTGAAGGAATATTCCCTGTTAATACT 810
Query 738 CTTGCTTGTGGTGACTCTGAACATGATGCTGAACTATTTAGCATTCCTGATGTTCACGGT 797
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 811 CTTGCTTGCGGTGACTCTGAACATGATGCTGAACTATTTAGCATTCCCGATGTTCACGGT 870
Query 798 GTTATGGTGAGCAATTCCCAAGAAGAGCTATTGAAGTGGCGTTCTGAAAATGCGTTGAAC 857
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 871 GTTATGGTGAGCAATTCCCAAGAAGAGCTATTGAAGTGGCGTTCTGAAAATGCTTTAAAC 930
Query 858 AACCTTAAGGTTATACATTCAACCGAGAGGTGTGCTGATGGGATTATTCAAGCCATCGGA 917
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 931 AACCTAAAGGTTATACATTCAACCGAGAGGTGTGCGGATGGGATTATTCAAGCCATTGGC 990
Query 918 CATTTTAATCTTGGTCCCGA-TCTATCTCCAAGAGATGTTTCGGAATTCTTGGATCGTAA 976
|||||||||||||| ||| | ||| |||||||||||||||||||||||||||||| | ||
Sbjct 991 CATTTTAATCTTGG-CCCAAATCTTTCTCCAAGAGATGTTTCGGAATTCTTGGATTGCAA 1049
Query 977 GATGGACAATGTGAATCCTGGTCACGAGGTTGTGAGATTCTACTTGTTCTACGAGAGATT 1036
| |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1050 AACGGACAATGCGAATCCTGGTCACGAGGTTGTGAGATTTTACTTGTTCTATGAGAGATT 1109
Query 1037 GAGACGCGGTGAGATCAAGAACTATGAGACATACATAGCCAGCTTCAAAGATTCATGTCT 1096
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1110 GAGACGCGGTGAGATCAAGAACTATGAGACATACATAGCCAGCTTCAAAGAGTCATGTCT 1169
Query 1097 CCATGCTGCTGTCCTTTTTCATCCATCAGGTGCAGAAAAATCTCTGAGAGACACCATTGA 1156
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1170 CCATGCTGCTGTCCTTTTTCATCCATCAGGTGCAGAGAAATCTCTGAGTGACACCATTGA 1229
Query 1157 TGAGCTGAAGAAGTGTTATGGTGACAAAAGAGGGAAGAAGTTTTGGGTTTGGGTAGATCA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TGAGCTGAAGAAGTGTTATGGTGACAAAAGAGGGAAGAAGTTTTGGGTTTGGGTAGATCA 1289
Query 1217 GGTTCTGGTAACAGACACCATTCCTGGCAAATGGATAGTGAAGTTTGATAAGTGGGAGCA 1276
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 GATTCTGATAACAAACACCATTCCTGGCAAATGGATAGTGAAGTTTGATAAGTGGGAGCA 1349
Query 1277 ATGCGAGGATGAAAGCCAATGCTGCAAAACGACTGTCGAATTTACTTCAAAGGGAGGAGA 1336
||||||||||||| | |||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct 1350 ATGCGAGGATGAACGTAAATGCTGCGAAACTACTGTCGAATTCACTTCAAAGGGAGGAAA 1409
Query 1337 TTTGGTGTGGGAGAAGGTGAAGCAGATATGGTCAGAGGAATCAAAGGTGAA--A-GATGA 1393
||||||||||||||||||||||||||||||||| |||||| || ||||||| | |||||
Sbjct 1410 TTTGGTGTGGGAGAAGGTGAAGCAGATATGGTCTGAGGAACCAGAGGTGAAGGATGATGA 1469
Query 1394 TAACAGTTCTTGGATTCTCTGAATATATTTTGGAGACTG-TTCTTCTCTTTCTCATGAGT 1452
||| || ||||||||||||||||||| ||| |||||||| || |||||||||||||||||
Sbjct 1470 TAATAGCTCTTGGATTCTCTGAATAT-TTT-GGAGACTGCTT-TTCTCTTTCTCATGAGT 1526
Query 1453 GAATTGGTATATGAACATTCT 1473
|||||||||||| ||||||||
Sbjct 1527 GAATTGGTATATCAACATTCT 1547
Score = 111 bits (60), Expect = 1e-23
Identities = 67/70 (96%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 1 TCTTCTCCAGAAAAAACAAAACTTTTTTCTTT-TCTCTCTCAACTTGCAGAAGAAGCGAT 59
|||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 7 TCTTCTTCAGAAAAAAAAAAACTTTTTTCTTTCTCTCTCTCAACTTGCAGAAGAAGCGAT 66
Query 60 TTACACAAGG 69
||||||||||
Sbjct 67 TTACACAAGG 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5