BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52350.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value Ahg485602 jgi|Araly1|485602|fgenesh2_kg.5__1594__AT3G52350.1 710 0.0 Ahg350119 jgi|Araly1|350119|fgenesh1_pg.C_scaffold_6000712 401 2e-111 > Ahg485602 jgi|Araly1|485602|fgenesh2_kg.5__1594__AT3G52350.1 Length=555 Score = 710 bits (384), Expect = 0.0 Identities = 502/557 (90%), Gaps = 16/557 (3%) Strand=Plus/Plus Query 1 ATGCAAGGAACAGAATATCTGGCTTGTACTCGGAGAGAAACGTCCGTTGTTCAGCTCCGA 60 |||||||||||| ||| |||||||||||| | |||||||||||||||||||||||||||| Sbjct 1 ATGCAAGGAACAAAATCTCTGGCTTGTACACAGAGAGAAACGTCCGTTGTTCAGCTCCGA 60 Query 61 GAGAGGCAAGGTTGGAAGGAAAGTACTGATATGGGAATCACCAAACAGGGACT------- 113 ||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 61 AAGAGGCAAGGTTGGAAGGAAAGTACTGGTCTGGGAATCATCAAACAGGGACTAGGAGCA 120 Query 114 G-G----TTATACAAAGGAGGAAGAAAACAGAAAAGTCCCAGGCTACAATTTCT-CACTA 167 | | |||||||||||||||||||||||| ||||| |||||||||| |||| || | Sbjct 121 GAGACAAATATACAAAGGAGGAAGAAAACAGACAAGTCTCAGGCTACAACTTCTCCA-AA 179 Query 168 CAGTGAAAAAGTGTCCAATGTTATTGGGGATTCTTCTGAATCAAGCAATCCATCGACTGC 227 |||||||||||||||| ||||||||| ||||||||||||||||||||| ||| | |||| Sbjct 180 TAGTGAAAAAGTGTCCAGTGTTATTGGTGATTCTTCTGAATCAAGCAATTCATTGGCTGC 239 Query 228 TATCAGTTCTTCTAACATTGGTTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGAAC 287 ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 240 TATCAATTCTTCTAACATTGGATTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGTAC 299 Query 288 TGGTCTAGGAATCACTGAACAAGGTATATTGGTGCCTCTACAAGCAGAACCAAAACATAA 347 |||||| |||||| |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 300 TGGTCTTGGAATCGCTGAACAAGGTATATTGGAGCCTCTACAAGCAGAGCCAAAACATAA 359 Query 348 CAAACAAGGACTAGGAGCTGAAAAACCAGCCAAGAGAAAACCGGCACAGCCTCAGGATAC 407 |||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||| Sbjct 360 CAAACAAGGACTAGGATCTGAAAAACCAGCTAAGAGAAAAGCGGCACAGACTCAGGATAC 419 Query 408 AGCTTTTGAAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTAGTG-AAGATGA 466 | ||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||| Sbjct 420 ATCTTCTGAAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATT-GCGGAAGATGA 478 Query 467 TCGAGCACGAAAAACGATTGGCGGAAAACGAATTTGAACGAGCCTTCCGCAGGGAGTTCT 526 | |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||| Sbjct 479 TTGAGCACGAAAAACGCTTAGCTGAAAACGAATTAGAACGAGCCTTCCGCAGGGAGTTCT 538 Query 527 GGCCTGATAATGTATAA 543 ||||||||||| ||||| Sbjct 539 GGCCTGATAATATATAA 555 > Ahg350119 jgi|Araly1|350119|fgenesh1_pg.C_scaffold_6000712 Length=426 Score = 401 bits (217), Expect = 2e-111 Identities = 321/370 (87%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 178 GTGTCCAATGTTATTGGG-GATTCTTCTGAATCAAGCAATCCATCGACTGCTATCAGTTC 236 ||||| || |||| |||| || || |||| |||||||| | ||| | ||||||| | ||| Sbjct 64 GTGTCGAACGTTA-TGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAATTC 122 Query 237 TTCTAACATTGGTTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGAACTGGTCTAGG 296 || |||||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 123 GTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTTGG 182 Query 297 AATCACTGAACAAGGTATATTGGTGCCTCTACAAGCAGAACCAAAACATAACAAACAAGG 356 |||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||| ||| Sbjct 183 AATCACTGAACAGGGTATATTGGTGCCTGTACAGGCAGAGCCAAAACATAACAAACGAGG 242 Query 357 ACTAGGAGCTGAAA-AACCAGCCAAGAGAAAACCGGCACAGCCTCAGGATACAGCTTTTG 415 ||| |||||| ||| ||||||| ||||||||||||||||||||||||| || || | | Sbjct 243 ACTGGGAGCT-AAACAACCAGCTAAGAGAAAACCGGCACAGCCTCAGGCTA-AGGAT--G 298 Query 416 AAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTAGTG-AAGATGATCGAGCAC 474 ||||||| |||||| |||||||||||||||| |||||| | | | |||||||| |||||| Sbjct 299 AAGAAGTCTCAAAGCAGAGCAAGAAACTTTCAAAGAAAAT-GCGGAAGATGATGGAGCAC 357 Query 475 GAAAAACGATTGGC-GGAAAACGAATTTGAACGAGCCTTCCGCAGGGAGTTCTGGCCTGA 533 ||||||| ||| | |||||| |||||||||||||||||| | |||||||||||||| || Sbjct 358 GAAAAAC-ATTTACAGGAAAAAGAATTTGAACGAGCCTTCTGTAGGGAGTTCTGGCCCGA 416 Query 534 TAATGTATAA 543 |||||||||| Sbjct 417 TAATGTATAA 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19802750691 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5