BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52350.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485602 jgi|Araly1|485602|fgenesh2_kg.5__1594__AT3G52350.1 710 0.0
Ahg350119 jgi|Araly1|350119|fgenesh1_pg.C_scaffold_6000712 401 2e-111
> Ahg485602 jgi|Araly1|485602|fgenesh2_kg.5__1594__AT3G52350.1
Length=555
Score = 710 bits (384), Expect = 0.0
Identities = 502/557 (90%), Gaps = 16/557 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGGAACAGAATATCTGGCTTGTACTCGGAGAGAAACGTCCGTTGTTCAGCTCCGA 60
|||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGCAAGGAACAAAATCTCTGGCTTGTACACAGAGAGAAACGTCCGTTGTTCAGCTCCGA 60
Query 61 GAGAGGCAAGGTTGGAAGGAAAGTACTGATATGGGAATCACCAAACAGGGACT------- 113
||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 61 AAGAGGCAAGGTTGGAAGGAAAGTACTGGTCTGGGAATCATCAAACAGGGACTAGGAGCA 120
Query 114 G-G----TTATACAAAGGAGGAAGAAAACAGAAAAGTCCCAGGCTACAATTTCT-CACTA 167
| | |||||||||||||||||||||||| ||||| |||||||||| |||| || |
Sbjct 121 GAGACAAATATACAAAGGAGGAAGAAAACAGACAAGTCTCAGGCTACAACTTCTCCA-AA 179
Query 168 CAGTGAAAAAGTGTCCAATGTTATTGGGGATTCTTCTGAATCAAGCAATCCATCGACTGC 227
|||||||||||||||| ||||||||| ||||||||||||||||||||| ||| | ||||
Sbjct 180 TAGTGAAAAAGTGTCCAGTGTTATTGGTGATTCTTCTGAATCAAGCAATTCATTGGCTGC 239
Query 228 TATCAGTTCTTCTAACATTGGTTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGAAC 287
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TATCAATTCTTCTAACATTGGATTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGTAC 299
Query 288 TGGTCTAGGAATCACTGAACAAGGTATATTGGTGCCTCTACAAGCAGAACCAAAACATAA 347
|||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 300 TGGTCTTGGAATCGCTGAACAAGGTATATTGGAGCCTCTACAAGCAGAGCCAAAACATAA 359
Query 348 CAAACAAGGACTAGGAGCTGAAAAACCAGCCAAGAGAAAACCGGCACAGCCTCAGGATAC 407
|||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||
Sbjct 360 CAAACAAGGACTAGGATCTGAAAAACCAGCTAAGAGAAAAGCGGCACAGACTCAGGATAC 419
Query 408 AGCTTTTGAAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTAGTG-AAGATGA 466
| ||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 420 ATCTTCTGAAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATT-GCGGAAGATGA 478
Query 467 TCGAGCACGAAAAACGATTGGCGGAAAACGAATTTGAACGAGCCTTCCGCAGGGAGTTCT 526
| |||||||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct 479 TTGAGCACGAAAAACGCTTAGCTGAAAACGAATTAGAACGAGCCTTCCGCAGGGAGTTCT 538
Query 527 GGCCTGATAATGTATAA 543
||||||||||| |||||
Sbjct 539 GGCCTGATAATATATAA 555
> Ahg350119 jgi|Araly1|350119|fgenesh1_pg.C_scaffold_6000712
Length=426
Score = 401 bits (217), Expect = 2e-111
Identities = 321/370 (87%), Gaps = 11/370 (3%)
Strand=Plus/Plus
Query 178 GTGTCCAATGTTATTGGG-GATTCTTCTGAATCAAGCAATCCATCGACTGCTATCAGTTC 236
||||| || |||| |||| || || |||| |||||||| | ||| | ||||||| | |||
Sbjct 64 GTGTCGAACGTTA-TGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAATTC 122
Query 237 TTCTAACATTGGTTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGAACTGGTCTAGG 296
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 123 GTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTTGG 182
Query 297 AATCACTGAACAAGGTATATTGGTGCCTCTACAAGCAGAACCAAAACATAACAAACAAGG 356
|||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct 183 AATCACTGAACAGGGTATATTGGTGCCTGTACAGGCAGAGCCAAAACATAACAAACGAGG 242
Query 357 ACTAGGAGCTGAAA-AACCAGCCAAGAGAAAACCGGCACAGCCTCAGGATACAGCTTTTG 415
||| |||||| ||| ||||||| ||||||||||||||||||||||||| || || | |
Sbjct 243 ACTGGGAGCT-AAACAACCAGCTAAGAGAAAACCGGCACAGCCTCAGGCTA-AGGAT--G 298
Query 416 AAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTAGTG-AAGATGATCGAGCAC 474
||||||| |||||| |||||||||||||||| |||||| | | | |||||||| ||||||
Sbjct 299 AAGAAGTCTCAAAGCAGAGCAAGAAACTTTCAAAGAAAAT-GCGGAAGATGATGGAGCAC 357
Query 475 GAAAAACGATTGGC-GGAAAACGAATTTGAACGAGCCTTCCGCAGGGAGTTCTGGCCTGA 533
||||||| ||| | |||||| |||||||||||||||||| | |||||||||||||| ||
Sbjct 358 GAAAAAC-ATTTACAGGAAAAAGAATTTGAACGAGCCTTCTGTAGGGAGTTCTGGCCCGA 416
Query 534 TAATGTATAA 543
||||||||||
Sbjct 417 TAATGTATAA 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19802750691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5