BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52360.1

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938116 jgi|Araly1|938116|scaffold_502307.1                        464    4e-130


> Ahg938116 jgi|Araly1|938116|scaffold_502307.1
Length=302

 Score =  464 bits (251),  Expect = 4e-130
 Identities = 271/281 (96%), Gaps = 0/281 (0%)
 Strand=Plus/Plus

Query  224  ATGGAGAGTTCATTAGGTTTCATGGCGGTTTTCGCCGTCTCAGGAAGCGTTGTGTTCTTA  283
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  22   ATGGAGAGTTCATTAGGTTTCATGGCGGTTTTCGCCGTCTCGGGAAGCGTTGTGTTCTTA  81

Query  284  GCGAGTCAATTTCACAAGCGTCTTCTCTCCGATTACATGGACAAGTTCGAATTCGAAATC  343
            |||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||
Sbjct  82   GCGAGTCAATTTCATAAGCGTCTTCTCTCCGATTACATGGAGAAATTCGATTTCGAAATC  141

Query  344  CGAGCGCAGaaaaaaaTGGTGATGAAGAAGAAGGTGAGATTCGCGGCGGATGTGGTGGAG  403
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  142  CGAGCGCAGAAAAAAATGGTGATGAAGAAAAAGGTGAGATTCGCGGCGGATGTGGTGGAG  201

Query  404  CCGTCGGGGAATAACAAAGAGTATCGCCGGAGACATTCTTCCAAGGCTAAATCGAATTCG  463
            |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| 
Sbjct  202  CCGTCGGGGAATAACAAAGAGTATCGCCGGCGACACTCTTCCAAGGCTAAATCGAATTCC  261

Query  464  AAGATGGCGGCAACTATTTGACTTTAAGGTTTTTTGTACAA  504
            ||||||||||||||||||||| |||||||||||||||||||
Sbjct  262  AAGATGGCGGCAACTATTTGATTTTAAGGTTTTTTGTACAA  302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25999829394


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5