BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52390.2
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485607 jgi|Araly1|485607|fgenesh2_kg.5__1599__AT3G52390.2 1400 0.0
> Ahg485607 jgi|Araly1|485607|fgenesh2_kg.5__1599__AT3G52390.2
Length=1147
Score = 1400 bits (758), Expect = 0.0
Identities = 822/853 (96%), Gaps = 4/853 (0%)
Strand=Plus/Plus
Query 53 ATGGGATGTTCAAAGGACTTTACCATGGCAAGAACTGTCATGTTCCGGATATTGCCACTG 112
||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 101 ATGGGATGTTCAAGGGACTTTACCATGGGAAGAAGTGTCATGTTCCCGATATTGCCACTG 160
Query 113 TCTTGAACCGGGCTTGGTCTGCTGGAGTCGATAGAATCATAGTAACTGGTGGGTCATTGG 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TCTTGAACCGGGCTTGGTCTGCTGGAGTCGATAGAATCATAGTAACTGGTGGGTCATTGG 220
Query 173 AAGAATCAAGAGAAGCTCTTGCAATTGCAGAGACTGATGGTAGGCTGTTTTGCACTGTTG 232
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 221 AAGAATCGAGAGAAGCTCTTGCAATTGCAGAAACTGATGGTAGGCTGTTTTGCACTGTTG 280
Query 233 GTGTTCATCCAACTAGATGCAATGAGTTTGAAGAGAGTGGTGATCCGGAGAAGCATTACC 292
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 281 GTGTTCATCCAACTAGATGCAATGAGTTTGAAGAGAGTGGTGATCCAGAAAAGCATTACC 340
Query 293 AGGCTCTTTTTTCATTAGCCAAAGAAGGAATGCAGAAAGGGAAGGTGGTAGCAATTGGTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 AGGCTCTTTTTTCATTAGCCAAAGAAGGAATGCAGAAAGGGAAGGTGGTAGCAATTGGTG 400
Query 353 AATGTGGATTGGATTATGACAGGCTTCAATTTTGCTC-AGTTGATATCCAGAAGAAGTAT 411
||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 401 AATGTGGATTGGATTATGATAGGCTTCAATTCTG-TCCAGTTGATATCCAGAAGAAGTAC 459
Query 412 TTTGAGAAGCAATTTGAACTAGCATATGCTACAAAGTTGCCAATGTTCCTACACATGCGA 471
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TTTGAGAAGCAATTCGAACTAGCATATGCTACAAAGTTGCCAATGTTCCTACACATGCGA 519
Query 472 GCAGCTGCTGAAGATTTCTGTGAAATTGTTGAGAGAAACAAGAATAGGTTCACTGGAGGA 531
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 520 GCAGCTGCTGAAGATTTCTGTGAAATTGTTGAGAGAAACAAGAATAGGTTCCCTGGAGGA 579
Query 532 GTTGCTCATTCATTTACTGGTAGTGCGTCGGACCGCGATAAGCTTCTCTCTTTCGATAAA 591
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 580 GTTGCTCATTCATTTACTGGTAGTGCATTGGACCGTGATAAGCTTCTCTCTTTCGATAAA 639
Query 592 ATGTACCTTGGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGAGGTAATGAAA 651
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 640 CTGTACCTTGGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGATGTAATGAAA 699
Query 652 GGAATACCAGTAGAGAGAATGATGATCGAAACCGACTCTCCATATTGTGATATCAAGAAC 711
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GGGATACCGGTAGAGAGGATGATGATCGAAACCGACTCTCCATATTGTGATATCAAGAAC 759
Query 712 ACACACGCCGGAATCAAGTTTGTAAAGTCGACTTGGCCTTCCAAGAAAAAAGAGAAGTAT 771
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 760 ACACACGCCGGAATCAAGTTTGTAAAATCGACTTGGCCTTCCAAGAAAAAAGAGAAGTAT 819
Query 772 GATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGT-CAGGCAAGTCCTTGA 830
|||||||| |||||||||||||||||||| |||||||||||||| | ||||||| |||||
Sbjct 820 GATCAAGAATCCCTTGTCAAAGGCCGTAACGAGCCTTGTTTAGTTC-GGCAAGTTCTTGA 878
Query 831 AGTGGTGGCTGGCTACAAAGGACTTGGCGATCTAAATCAAGTTAGCTCAACCTTGTACCA 890
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GGTGGTAGCTGGCTACAAAGGACTTGGCGATCTAAATCAAGTTAGCTCAACCTTGTACCA 938
Query 891 CAACACTTGCAGG 903
|||||||||||||
Sbjct 939 CAACACTTGCAGG 951
Score = 122 bits (66), Expect = 4e-27
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1004 GGAATCAAGATATGTTGTTACATTACACCATTTATGGATTAAAAACATTCTCAATAAAAA 1063
|||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1065 GGAATCAAGATA---TGTTACATTACACCATTTTTGGATTAAAAGCATTCTCAATAAAAA 1121
Query 1064 TTACAAACAATCTCTTGTTTTCTATC 1089
|||||||||||||| |||||||||||
Sbjct 1122 TTACAAACAATCTCGTGTTTTCTATC 1147
Score = 115 bits (62), Expect = 6e-25
Identities = 66/68 (97%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 907 TTCTTCCCTCAGGACTTAGATTCTGCTGCAGATGCTCTGCTTTCCGGGCACCACGAGACC 966
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 997 TTCTTCCCTCAGGACTTGGATTCTGCTGCAGATGCTCTGCTTTCCGGGCACCATGAGACC 1056
Query 967 GACTAGCA 974
||||||||
Sbjct 1057 GACTAGCA 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5