BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52400.1
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485608 jgi|Araly1|485608|fgenesh2_kg.5__1600__AT3G52400.1 1746 0.0
> Ahg485608 jgi|Araly1|485608|fgenesh2_kg.5__1600__AT3G52400.1
Length=1290
Score = 1746 bits (945), Expect = 0.0
Identities = 1192/1307 (91%), Gaps = 33/1307 (3%)
Strand=Plus/Plus
Query 6 TTTGACTCGTCAATATAAATACAATTGTAACAAACAGATTTTGATCAAAAGATTTTACTT 65
|||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1 TTTGACTCGTCAATATAAATACAATTGTAACAAACAGATTTTGATC---A-A----A--- 49
Query 66 TTCTCAATTCCTTTCAACTTTCAAAATCG-A-A------G-ATCTCTTAAGCCATGAACG 116
||||||||||||| |||||||||||||| | | | |||||||||||||||||||
Sbjct 50 -TCTCAATTCCTTTGAACTTTCAAAATCGAAGATCTCTCGTATCTCTTAAGCCATGAACG 108
Query 117 ATCTTCTCTCCGGCTCGTTTAAAAC-CTCCGTCGCGGACGGTTCATCGCCGCCGCACTCA 175
||||||||||| |||||||| || | |||||||||||||| |||||||||||||||||||
Sbjct 109 ATCTTCTCTCCCGCTCGTTT-AACCGCTCCGTCGCGGACGATTCATCGCCGCCGCACTCA 167
Query 176 CACAACATCGAGATGTCAAAAGCGAAAGTCTCCGGCGGAAGTTGCCACGGTGGTAACAAC 235
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 168 CACAACATCGAGATGTCAAAAGCGAAATTCTCCGGCGGAAGTTGCAAAGGTGGTAACAAC 227
Query 236 CTAGACACGTTCTTCCTCGACGTGGAGGTTGTAAACGAAGACCTTAAAGAGCTAGATCGT 295
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 228 CTCGACAAGTTCTACCTCGACGTGGAGGTTGTAAACGAAGACCTTAAAGAGCTTGATCGT 287
Query 296 C-TCTGTCACAACCTCCGATCGAGCAACGAACAGAGCAAGACGCTTCATAACGCTAACGC 354
| || ||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 288 CTTC-GTCGCAACCTCCAATCGAGCCACGAACAGAGCAAGACGCTTCATAACGCTATGGC 346
Query 355 GGTGAAGGAGCTGAAGAAGAAGATGGACGCTGACGTCACTGCTGCGCTTAAGACGGCGAG 414
|||||| ||||||| | |||||||||||||||||| || || ||||| |||||||||||
Sbjct 347 GGTGAAAGAGCTGATGTTGAAGATGGACGCTGACGTGACGGCGGCGCTCAAGACGGCGAG 406
Query 415 GCGCTTGAAAGGAAACCTCGAGGCTTTAGATCGGGCTAATGAAGTCAACCGAAGTTTACC 474
|||| || |||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 407 GCGCGTGCAAGGGAACCTTGAGGCTTTAGATCGGGCTAATGAAGTCAACCGGAGTTTACC 466
Query 475 GGAAAGTGGACCGGGTTCGTCGTCGGACCGGCAAAGAACTTCGGTGGTTAACGGGTTGAG 534
||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||
Sbjct 467 GGAAAGTGGACCGGGTTCGTCATCGGACCGGCAAAGGATTTCGGTGGTTAACGGTTTGAG 526
Query 535 GAAGAAGCTGAAGGATGAGATGGAAAAATTTAGTCGAGTGAGAGAAACGATCACGAATGA 594
|||||||||||| ||||| |||||||| |||| |||||||||||| || |||||| | ||
Sbjct 527 GAAGAAGCTGAAAGATGACATGGAAAATTTTAATCGAGTGAGAGAGACAATCACGGAGGA 586
Query 595 GTACAAAGAGACGGTTGGGAGAATGTGCTTCACCGTCACCGGCGAATATCCCGACGAAGC 654
||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 587 GTACAAAGAGACGATTGGGAGAAGGTACTTCACCGTCACCGGCGAATATCCCGACGAAGC 646
Query 655 TACCCTCGAGCGTCTCATCTCCACAGGTGAAAGTGAAACATTTTTGCAGAAAGCGATTCA 714
|||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 647 TACCGTCGATCGTCTCATCTCCACAGGTGAAAGTGAAACATTCTTGCAGAAAGCGATACA 706
Query 715 AGAACAAGGTCGTGGTAGGATTTTGGACACTATTAACGAGATACAGGAGAGGCACGACGC 774
|||||||||||||||||||||||||||||| || || |||||||| ||||||||||| ||
Sbjct 707 AGAACAAGGTCGTGGTAGGATTTTGGACACCATCAATGAGATACAAGAGAGGCACGATGC 766
Query 775 AGTGAAAGATATTGAGAAGAGTTTGAATGAGTTGCACCAAGTGTTTCTTGATATGGCTGT 834
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 767 AGTTAAAGACATTGAGAAGAGCTTGAATGAGTTGCACCAAGTGTTTCTTGATATGGCTGT 826
Query 835 GTTGGTTGAGCATCAGGGTGCACAGCTTGATGACATTGAAGGCAACGTCAAACGAGCTAA 894
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 827 GTTGGTTGAGCATCAGGGTGCACAGCTTGACGACATTGAAGGCAACGTCAAACGAGCTAA 886
Query 895 CTCGCTTGTTCGGTCTGGTGCGGACCGGCTTGTTAAGGCACGGTTTTATCAGAAGAACAC 954
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 887 CTCGCTTGTTCGGTCCGGTGCTGACCGGCTTGTTAAGGCACGGTTTTATCAGAAGAATAC 946
Query 955 ACGGAAGTGGACTTGCTTTGCCATTTTGCTATTGCTCATTATTGTGGTTTTAATTGTGGT 1014
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 947 ACGGAAGTGGACTTGCTTCGCCATTTTGCTATTGCTCATTATTGTGGTTTTAGTTGTGTT 1006
Query 1015 GTTTACTGTTAAGCCTTGGGAGAGTAATGGTGGGGGAGGTGGAGGTGCACCTCGTCAAGC 1074
||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||
Sbjct 1007 GTTTACTGTTAAGCCTTGGGAGAGTAATGGTGGTGGAGGTGGAGGTTCCCCCCGTCAAGC 1066
Query 1075 TACTCCGGTTCAAGCTCAGCCACCGCCACCTCCGGCTGTGAATCGGCGGCTACTACGCTA 1134
||||||||||||||||||| |||||||||||||| ||||||| || |||||||| |||||
Sbjct 1067 TACTCCGGTTCAAGCTCAGTCACCGCCACCTCCGACTGTGAACCGCCGGCTACTTCGCTA 1126
Query 1135 AATAAtttttttttt--GAGGTTCCCTCTGTCTATGCATGAGCATATCTAtgttttg-aa 1191
|| | |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1127 AA-ACTTTTTTTTTTTTGAGGTTCCCTCGGTCTATGCATGAGCATATCTATGTTTTGGAA 1185
Query 1192 gattgttttttattttacagtattttgtctttaatgtttttgtaatgttttgGTTGGTTA 1251
|||||||||| ||||| | | |||| |||||||| | ||||||||||||||||||||||
Sbjct 1186 -ATTGTTTTTTTTTTTA-A-T-TTTTATCTTTAATCTGTTTGTAATGTTTTGGTTGGTTA 1241
Query 1252 AACTCTGTGTATATATAATGCGATCACCACATTTCTTTGTTTTATTA 1298
||||||||||||||||||||||| || ||||||| ||||||| ||||
Sbjct 1242 AACTCTGTGTATATATAATGCGAGCATCACATTTATTTGTTTCATTA 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49979144187
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5