BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52420.1
Length=329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485609 jgi|Araly1|485609|fgenesh2_kg.5__1601__AT3G52420.1 418 1e-116
> Ahg485609 jgi|Araly1|485609|fgenesh2_kg.5__1601__AT3G52420.1
Length=277
Score = 418 bits (226), Expect = 1e-116
Identities = 259/275 (94%), Gaps = 2/275 (1%)
Strand=Plus/Plus
Query 8 CCACCGACACGCGAACAAGACGACGACGCAGCGATGGGAAAAACTTCGGGAGCGAAACAG 67
||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 4 CCACCGACACGCGAAGGAGACGAAGACGCAGCGATGGGAAAAGCTTCGGGAGCGAAACAG 63
Query 68 GCGACTGTGGTGGTCGCAGCGATGGCGTTAGGATGGTTAGCCATAGAGATCGCTTTCAAG 127
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 64 GCGACTGTGGTGGTCGCAGCGTTGGCGTTAGGATGGTTAGCCATAGAGATCGCTTTCAAG 123
Query 128 CCTTTCCTCGATAAATTCCGCTCCTCAATCGACAAATCTGACCCAACCAAAGACCCCGAT 187
||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 124 CCTTTCCTCGACACATTCCGTTCCTCAATCGACAAATCTGACCCGTCCAAAGACCCCGAT 183
Query 188 GACTTCGACACCGCCGCTACTGCAACCACATCCAAAGAGGGTTTGTAAAATTAGGGTTTT 247
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 184 GACTTCGACACAGCCGCTAAGGCAACCACATCCAAAGAGGGTTTGTAAAATTAGGGTTTT 243
Query 248 ATCAGATTAAAGAGATTTACTG-ATTTCAATCCAT 281
|||||||||||||||||| ||| ||| ||||||||
Sbjct 244 ATCAGATTAAAGAGATTTGCTGGATT-CAATCCAT 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11637454645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5