BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52430.1
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938122 jgi|Araly1|938122|scaffold_502313.1 2361 0.0
> Ahg938122 jgi|Araly1|938122|scaffold_502313.1
Length=1669
Score = 2361 bits (1278), Expect = 0.0
Identities = 1549/1679 (92%), Gaps = 22/1679 (1%)
Strand=Plus/Plus
Query 177 CTCTACTCGATATCCAATCATGGACGATTGTCGATTCGAGACGAGTGAGTTGCAAGCTTC 236
||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 2 CTCTACTCGATCTCCAATCATGGAAGATTGTCGATTCGAGACGAGTGAGTTACAAGCGTC 61
Query 237 GGTAATGATATCGACTCCTTTATTTACCGATTCTTGGAGTTCATGCAACACCGCAAATTG 296
| | ||||| ||||| || |||||||||||||||||||||||||||||| |||| |||||
Sbjct 62 GTTGATGATGTCGACACCGTTATTTACCGATTCTTGGAGTTCATGCAACGCCGCGAATTG 121
Query 297 CAACGGGAGTATAAAGATCCATG-ACATCGCCGGGATTACATACGTTGCTATACCGGCGG 355
| ||||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||
Sbjct 122 CGACGGGAGTATAAAGATCCA-GCACATCGCCGGAATTACGTACGTTGCTATACCGGCGG 180
Query 356 TATCGATGATTCAGTTGGGGAATCTTGTGGGCTTGCCAGTCACCGGAGATGTTCTTTTCC 415
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TGCCGATGATTCAGTTGGGGGATCTTGTGGGCTTGCCAGTCGCCGGAGATGTTCTTTTCC 240
Query 416 CCGGCTTATCCTCCGATGAACCTCTACCTATGGTCGACGCTGCCATACTCAAACTCTTTC 475
||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct 241 CCGGCTTATCCTCCGATGAGCCTCTGCCTATGGTCGACGCTGCCATACTTAATCTCTTTT 300
Query 476 TTCAGTTAAAGATCAAGGAAGGATTGGAATTGGAATTGTTAGGTAAAAAGCTGGTGGTGA 535
|||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct 301 TTCAATTAAAGATCAAGGAAGTATTGGAATTGGAATTGGTAGGAAAAAAGCTGGTGGTGA 360
Query 536 TAACCGGCCATTCAACCGGCGGCGCATTGGCCGCTTTCACCGCACTTTGGCTTCTATCTC 595
||||||| ||||||||||| || ||| |||||||| ||||||||||||||||||||||||
Sbjct 361 TAACCGGTCATTCAACCGGTGGTGCAGTGGCCGCTCTCACCGCACTTTGGCTTCTATCTC 420
Query 596 AATCTTCTCCGCCGTCATTCCGCGTCTTTTGTATCACCTTTGGCTCTCCTCTGCTCGGAA 655
|| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 AAACTTCTCTGCCGCCATTCCGCGTCTTTTGCATCACCTTTGGCTCTCCTCTGCTCGGAA 480
Query 656 ACCAATCTCTCTCCACCTCAATTTCACGATCACGTTTAGCACACAACTTCTGCCACGTGG 715
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 ACCAATCTCTCTCTACCTCAATTTCACGATCACGTTTAGCACATAACTTCTGCCACGTGG 540
Query 716 TCTCCATCCACGACCTCGTTCCTAGAAGCAGCAATGAACAATTCTGGCCCTTTGGAACTT 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTCCATCCACGACCTCGTTCCTAGAAGCAGCAATGAACAATTCTGGCCCTTTGGAACTT 600
Query 776 ACT-TGTTCTGTTCCGACAAAGGAGGTGTCTGTCTAGACAACGCTGGTTCTGTTCGTCTG 834
| | | |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 601 A-TCTCTTCTGTTCCGACAATGGAGGTGTCTGTCTAGACAACGCTGATTCTGTTCGTCGG 659
Query 835 ATGTTTAATATCCTCAACACCACAGCAACTCAAAACACCGAGGAACATCAGAGGTACGGA 894
|||||| ||||||||||| |||| | ||||| ||||| ||||||||||||||||||||||
Sbjct 660 ATGTTTGATATCCTCAACGCCACGGGAACTCCAAACATCGAGGAACATCAGAGGTACGGA 719
Query 895 CACTATGTGTTCACACTTTCACACATGTTTCTTAAATCTAGAAGCTTTCTTGGTGGGAGT 954
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 720 CACTATGTGTTCACACTTTCTCACATGTTTCTTAAATCTAGAAGCTTTCTTGGTGGGAAT 779
Query 955 ATCCCCGACAATAGCTACCAAGCTGGTGTTGCGTTAGCCGTTGAAGCTCTAGGTTTCTCT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATCCCCGACAATAGCTACCAAGCTGGTGTTGCGTTAGCCGTTGAAGCTCTAGGTTTCTCT 839
Query 1015 AACGATGACACAAGTGGCGTTTTAGTCAAAG-AATGTATAGAAACAGCTACAAGAATTGT 1073
|| |||||||||||||| || |||||| ||| |||||||||||| |||||||||||||||
Sbjct 840 AATGATGACACAAGTGGTGTATTAGTC-AAGAAATGTATAGAAAAAGCTACAAGAATTGT 898
Query 1074 TCGGGCTCCTATTCTGAGGTCAGCTG-AGTTAGCCAATGAGCTTGCTAGTGTCTTGCCAG 1132
||||||||| |||||||||||||| | | ||||||||||| |||||||||||||||||||
Sbjct 899 TCGGGCTCCGATTCTGAGGTCAGCCGCA-TTAGCCAATGATCTTGCTAGTGTCTTGCCAG 957
Query 1133 CAAGACTCGAGATTCAATGGTACAAAGATCGTTGCGATGCATCAGAAGAGCAGCTAGGTT 1192
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 958 CAAGACTTGAGATTCAATGGTACAAAGATCGTTGCGACGCATCAGAAGAGGAGCTCGGTT 1017
Query 1193 ACTACGATTTCTTCAAACGATATTCGTTGAAGA-GAGACTTTAAAGTGAACATGAGTCGC 1251
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1018 ACTACGATTTCTTCAAACGATATTCGTTGAA-ACGAGACTTTAAGGTGAACATGAGTCGC 1076
Query 1252 ATAAGACTAGCTAAGTTTTGGGACACAGTGATTAAAATGGTGGAGACGAATGAGTTACCT 1311
|||||||||||| |||||||||||| |||| || |||||||||||||||||||||| |||
Sbjct 1077 ATAAGACTAGCTCAGTTTTGGGACAAAGTGGTTGAAATGGTGGAGACGAATGAGTTGCCT 1136
Query 1312 TTTGATTTTCATTTAGGAAAGAAATGGATTTACGCATCTCAATTTTATCAACTCTTAGCC 1371
|||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1137 TTTGATTTTCATCTAGGAAAGAAATGGGTTTACACGGCTCAATTTTATCAACTCTTAGCC 1196
Query 1372 GAGCCACTCGACATTGCGAATTTCTACAAAAACAGAGATATAAAGACTGGCGGGCATTAC 1431
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 1197 GAGCCACTCGACATTGCGAATTTCTACAAAAACAGAGATATAAAGAGTGGTGGACATTAC 1256
Query 1432 TTGGA---GGGGAATAGACCTAAAAGGTATGAGGTGATTGATAAATGGCAGAAAGGAGTT 1488
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1257 TTGGATCAGGGGAATAGACCTAAAAGGTATGAGGTGATTGATCAATGGCAGAAAGGATTT 1316
Query 1489 A-AAGTGCCTGAGGAGTGTGTGAGAAGCAGATACGCGAGCACAACGCAAGATACTTGCTT 1547
|| |||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1317 GGAA-TGCCCGAGAAGTGTGTGAGAAGCAGATACACGAGCACTACGCAAGATACTTGCTT 1375
Query 1548 TTGGGCTAAGCTTGAGCAAGCAAAAGAGTGGTTGGATGAGGCGAGAAAAGAGAGTAGTGA 1607
|||||||||||||||| ||| ||||||||| |||||||||| || |||||||||||||||
Sbjct 1376 TTGGGCTAAGCTTGAGGAAGTAAAAGAGTGTTTGGATGAGGTGATAAAAGAGAGTAGTGA 1435
Query 1608 TCCCCAGAGGAGATCTTTGTTACGGGAAAAGATTGTTCCATTCGAGAGTTATGCGAATAC 1667
| | |||||| ||||||||||| ||||||||||| ||| || ||||| |||||||||||
Sbjct 1436 TGCGCAGAGGCGATCTTTGTTATGGGAAAAGATTATTCGGTTTGAGAGATATGCGAATAC 1495
Query 1668 ATTGGTGACGAAGAAGGAGGTTTCTTTGGATGTTAAAGCGAAGAACTCGAGTTATAGTGT 1727
|||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 1496 ATTGGTGAAGAAGAAGGAGGTTTCTAAGGATGTTAAGGCGAAGAATTCGAGTTATAGTGT 1555
Query 1728 GTGGGAGGCGAA-TCTGAAAGAGTTCAAG-TGCAAAATGGGTTATGAAAATGAAATTGAG 1785
||||| || ||| ||||| |||||||||| | |||||||||||||| |||||||||||||
Sbjct 1556 GTGGGTGG-GAAATCTGAGAGAGTTCAAGGT-CAAAATGGGTTATGTAAATGAAATTGAG 1613
Query 1786 ATGGTTGTTGATGAGAGTGACGCAATGGAGACTTAGTAGGACTAATAGCAAATCGAATG 1844
||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct 1614 ATGGTTG---ATGAGAGTGACGCAATGGAGACTTCGTAGGATTAATAGCAAATCTAATG 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5