BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52440.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938123 jgi|Araly1|938123|scaffold_502314.1 1110 0.0
Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2 97.1 2e-19
Ahg496791 jgi|Araly1|496791|fgenesh2_kg.8__2607__AT5G65590.1 84.2 1e-15
> Ahg938123 jgi|Araly1|938123|scaffold_502314.1
Length=798
Score = 1110 bits (601), Expect = 0.0
Identities = 704/753 (93%), Gaps = 9/753 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGAGCAGAGGCCTTGACATCATCGTTTATATGGCGGCCAAACGCAAACGCAAAC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGGAGAGAGCAGAGGCCTTGACGTCATCGTTTATATGGCGGCCAAACGCAAACGCAAAC 83
Query 61 GCGGAGATCACGCCGAGTTGTCCAAGATGTGGATCCTCTAACACAAAGTTCTGTTACTAC 120
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 84 ACGGAGATAACGCCGAGTTGTCCAAGATGTGGATCCTCCAACACAAAGTTCTGTTACTAC 143
Query 121 AACAACTATAGCCTCACTCAGCCTCGCTACTTCTGCAAAGGCTGCCGCAGATATTGGACC 180
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 144 AACAACTATAGCCTAACTCAGCCTCGCTACTTTTGCAAAGGCTGCCGCAGATATTGGACC 203
Query 181 AAAGGTGGTTCCCTCCGCAATGTTCCTGTAGGCGGTGGCTGTCGAAAATCCCGCCGCCCC 240
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 204 AAAGGTGGCTCCCTCCGCAATGTTCCTGTAGGTGGTGGCTGTCGCAAATCCCGCCGCCCC 263
Query 241 AAATCATCTTCTGGTAACAATACTAAAACTAGCCTAACCGCTAATTCTGGCAACCCCGGT 300
||||| || ||||||||||| ||||||| ||||||||||||||||||||| | | |||
Sbjct 264 AAATCCTCCTCTGGTAACAACGCTAAAACCGGCCTAACCGCTAATTCTGGCAGCTCTGGT 323
Query 301 GGTGGTTCACCAAGCATCGATCTTGCTCTTGTTTACGCCAATTTCTTGAATCCAAAGCCT 360
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 324 GGTGGTTCACCAAGTATAGATCTTGCTCTTGTTTACGCCAATTTCTTGAATCCAAAGACT 383
Query 361 GACGAATCTATACTACAAGAAAATTGCGACTTAG---C---CACTACGGATTTTTTGGTA 414
|| |||||||||||||||||||| ||||| |||| | ||||||||||||| | ||
Sbjct 384 GATGAATCTATACTACAAGAAAACTGCGATTTAGCTACAGTCACTACGGATTTTCTAGTT 443
Query 415 GATAATCCTACCGGCACTTCCATGGACCCTTCATGGAGTATGGACATCAATGATGG---T 471
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 444 GATAATCCTACTGGCACTTCCATGGACCCTTCATGGAGTATGGACATCAATGATGGTCAT 503
Query 472 CATCATGATCATTATATTAATCCGGTGGAACACATTGTGGAGGAATGTGGTTATAATGGC 531
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 504 CATCATGATCATTACAATAATCAGGTGGAACACATTGTGGAGGAATGTGGTTATAATGGC 563
Query 532 TTGCCTCCATTTCCTGGTGAAGAGCTTCTCTCTTTAGACACTAATGGTGTTTGGTCTGAT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TTGCCTCCATTTCCTGGTGAAGAGCTTCTCTCTTTAGACACTAATGGTGTTTGGTCTGAT 623
Query 592 GCTTTGTTGATTGGTCATAACCATGTAGACGTTGGCGTGACTCCGGTTCAGGCTGTACAC 651
|||||||||||||| |||||||| ||||| ||||| |||||||||| |||||||||||||
Sbjct 624 GCTTTGTTGATTGGCCATAACCACGTAGATGTTGGTGTGACTCCGGCTCAGGCTGTACAC 683
Query 652 GAACCGGTGGTTCATTTCGCTGACGAATCCAATGATTCCACCAATCTCTTGTTTGGAAGT 711
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 684 GACCCGGTGGTTCATTTCGCTGATGAATCCAATGATTCCACCAACCTCTTGTTTGGAAGT 743
Query 712 TGGAGCCCTTTTGATTTCACTGCCGATGGATGA 744
|||||||||||||||||||| ||||||||||||
Sbjct 744 TGGAGCCCTTTTGATTTCACGGCCGATGGATGA 776
> Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2
Length=1613
Score = 97.1 bits (52), Expect = 2e-19
Identities = 101/124 (81%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 100 AACACAAAGTTCTGTTACTACAACAACTATAGCCTCACTCAGCCTCG-CTACTTCTGCAA 158
||||||||||||||||||||||||||||| |||||| ||||||| || | |||| |||||
Sbjct 149 AACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCCACGGC-ACTTTTGCAA 207
Query 159 AGGCT-GCC-GCAGATATTGGACCAAAGGTGGTTCCCTCCGCAATGTTCCTGTAGGCGGT 216
|||| || | || || ||||| | |||||| | ||| | || ||||| |||||||||
Sbjct 208 -GGCTTGCAAG-AGGTACTGGACGAGAGGTGGGACTCTCAGGAACGTTCCCGTAGGCGGT 265
Query 217 GGCT 220
|||
Sbjct 266 AGCT 269
> Ahg496791 jgi|Araly1|496791|fgenesh2_kg.8__2607__AT5G65590.1
Length=1370
Score = 84.2 bits (45), Expect = 1e-15
Identities = 56/61 (92%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 100 AACACAAAGTTCTGTTACTACAACAACTATAGCCTCACTCAGCCTCG-CTACTTCTGCAA 158
||||||||||||||||||||||||||||| || ||| |||||||||| | ||||||||||
Sbjct 254 AACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAGCCTCGTC-ACTTCTGCAA 312
Query 159 A 159
|
Sbjct 313 A 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5