BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52450.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485612 jgi|Araly1|485612|fgenesh2_kg.5__1604__AT3G52450.1 2423 0.0
> Ahg485612 jgi|Araly1|485612|fgenesh2_kg.5__1604__AT3G52450.1
Length=1632
Score = 2423 bits (1312), Expect = 0.0
Identities = 1508/1600 (94%), Gaps = 24/1600 (2%)
Strand=Plus/Plus
Query 1 GCTAACTTATTCAAACCAATTCACATATCTCCTAAATCTCAACGACTGCACTTTGA---A 57
||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |
Sbjct 1 GCTAACTTATTCAAACCAATTCACATAGCTCCTAAATCTCAACGAATACACTTTGAGGCA 60
Query 58 GC----T-TTTTGTTTAGATTCGTTCGTCGTTTCCATTGATTAAGTC-TACTTCtt-ttt 110
| | ||||||| |||||||||||||||||| ||| |||||||| |||||||| |||
Sbjct 61 ACATTTTCTTTTGTTGAGATTCGTTCGTCGTTTCTATTCATTAAGTCTTACTTCTTCTTT 120
Query 111 tttCATATTTTCGAGCGGGTCAAATGGATCAAGAGATAGAGATTCCTTCCTTCTTCCTTT 170
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCATATTTTCGGGCGGGTCAAATGGATCAAGAGATAGAGATTCCTTCCTTCTTCCTTT 180
Query 171 GTCCAATCTCTCTAGATATCATGAAAGATCCGGTGATAGTTTCCACCGGAATAACCTACG 230
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GTCCGATCTCTCTAGATATCATGAAAGATCCGGTGATTGTTTCCACCGGAATAACCTACG 240
Query 231 ACCGAGAAAGCATCGAGAAGTGGCTCTTTTCCGGTAAGAAAAACTCATGTCCAGTCACCA 290
|| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ACAGAGAAAGCATCGAGAAATGGCTCTTTTCCGGTAAGAAAAACTCATGTCCGGTCACCA 300
Query 291 AACAAGTCATAACCGAAACTGATCTTACCCCAAACCACACTCTTCGCCGTTTGATTCAAT 350
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct 301 AACAAGTCATAACCGAAACCGATCTTACCCCAAACCACACTCTTCGCCGCCTGATCCAAT 360
Query 351 CTTGGTGTACCCTCAACGCATCATATGGTATAGAGAGGATCCCAACTCCAAAACCTCCGA 410
|||||||||| || ||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 361 CTTGGTGTACTCTTAACGCATCATACGGTATCGAGAGGATCCCAACCCCAAAACCTCCGA 420
Query 411 TCTGTAAATCGGAGATCGAAAAGCTTATCAAAGAGTCGTCATCTTCGCATCTAAACCAAG 470
|||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 421 TCTGTAAATCCGAGATCGAAAAGCTTATCAAAGATTCGTCAACTTCGCATCTAAACCAAG 480
Query 471 TCAAATGCCTCAAACGACTTCGTCAAATAGTATCTGAGAATACAACCAACAAACGGTGCT 530
|||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||
Sbjct 481 TCAAATGCCTCAAACGACTTCGTCAAATAGTATCGGAGAATACGACGAACAAACGTTGCT 540
Query 531 TAGAAGCCGCAGAAGTTCCGGAGTTTTTGGCAAATATCGTAAGCAACTCTGTAGATACGT 590
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 541 TAGAAGCCGCAGAAGTTCCGGAGTTTTTGGCGAATATCGTAAGCAACTCCGTTGATACGT 600
Query 591 ATAACTCTCCTTCTTCTTCACTTTCTTCTTCGAATCT-CAACGACATGTGTCAGTCAAAC 649
||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 601 ATAGTTCTCCTTCTTCTTCGCTTTCTTCTTCGAAT-TACAACGACATGTGTCAGTCAAAC 659
Query 650 ATGTTGGAGAATCGATTTGATTCTTCAAGAAGCTTGATGGACGAAGCCCTAAGCGTACTC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGTTGGAGAATCGATTTGATTCTTCAAGAAGCTTGATGGACGAAGCCCTAAGCGTACTC 719
Query 710 TACCATCTTGACACATCGGAGACAGCCCTCAAGAGTCTTTTAAACAACAAGAAAGGAACA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TACCATCTTGACACATCGGAGACAGCCCTCAAGAGTCTTTTAAACAACAAGAAAGGAACA 779
Query 770 AATCTTGTGAAAACGTTGACGAAGATTATGCAACGTGGGATCTACGAGTCAAGAGCCTAT 829
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 AATCTTGTCAAAACGTTGACGAAGATTATGCAACGTGGGATCTACGAGTCGAGAGCCTAT 839
Query 830 GCGGCTTTGCTTCTCAAGAAGCTCCTGGAAGTTGCGGATCCAATGCAGATCATATTGTTG 889
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 GCGGCTTTGCTTCTCAAGAAGCTCCTAGAAGTTGCGGATCCAATGCAGATCATATTGTTG 899
Query 890 GAACGAGAACTTTTCGGTGAGGTGATTCAAATCTTGCACGACCAGATCTCTCACAAGGCG 949
|||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 900 GAACGAGAACTTTTCGGTGAGGTGGTTCAGATCTTGCATGACCAGATCTCTCACAAGGCG 959
Query 950 ACAAGATCAGCAATGCAAATCTTGGTGATCACATGTCCATGGGGAAGGAATAGACACAAG 1009
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 ACAAGATCAGCAATGCAAATCTTGGTGATTACATGTCCATGGGGAAGGAATAGACACAAG 1019
Query 1010 GCAGTGGAAGGTGGAACAATCTCGATGATAATCGAGCTTTTAATGGACGATACTTTCTCA 1069
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCAGTGGAAGCTGGAGCAATTTCGATGATAATCGAGCTTTTAATGGACGATACTTTCTCA 1079
Query 1070 TCAGAGAGAAGGAATTCAGAGATGGCGATGGTGGTTCTTGATATGTTATGTCAGTGCGCA 1129
|| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 TCTGAGCGAAGAAATTCGGAGATGGCGATGGTTGTTCTTGATATGTTATGTCAGTGCGCA 1139
Query 1130 GAAGGAAGAGCTGAGTTCTTGAATCACGGTGCCGCTATTGCGGTTGTGTCTAAGAAGATA 1189
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1140 GAAGGAAGAGCTGAGTTCTTGAATCATGGTGCGGCTATTGCGGTTGTGTCTAAGAAGATA 1199
Query 1190 TTGAGGGTCTCACAAATAACTAGTGAAAGGGCAGTTAGGGTTTTGCTTTCGGTTGGGAGG 1249
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1200 TTGAGGGTCTCACAGATAACTAGTGAAAGGGCGGTTAGGGTTTTGCTTTTGGTTGGGAGG 1259
Query 1250 TTCTGCGCGACACCCTCTTTGTTGCAGGAGATGTTGCAATTGGGAGTTGTAGCAAAGCTG 1309
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTCTGTGCGACACCCTCTTTGTTGCAGGAGATGTTGCAATTGGGAGTTGTAGCAAAGCTG 1319
Query 1310 TGTCTGGTACTTCAAGTTAGCTGTGGTAACAAGACTAAAGAAAAGGCTAAAGAATTGCTT 1369
|||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct 1320 TGTCTGGTTCTTCAAGTTAGCTGTGGGAACAAAACTAAAGAAAAGGCGAAGGAATTGCTT 1379
Query 1370 AAGCTTCACGCTAGGGTTTGGAGGGAATCACCTTGTGTCCCAAGAAATTTGTATGATTCG 1429
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGCTTCACGCCAGGGTTTGGAGGGAATCACCTTGTGTCCCAAGAAATTTGTATGATTCG 1439
Query 1430 TATCCTGCTTGAACAACGTACATGTTTGAATAATTCTCATCAGAT-ACAAACAATTCTTT 1488
||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||
Sbjct 1440 TATCCTGCTTGAACAACGTACATGTTTGATTAATTCTCATCAG-TGACAAA-AATTCTTT 1497
Query 1489 GAGAATTATTCTTC-----GTATAAGTTCATTTTAAAACAAAAAAGAGTGGtttaaattt 1543
|||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 1498 GAGAGTTATTCTTCTCTTCGTATAAGTTCATTTAAAAACAAAAAAGAGTGGTTTAATTTT 1557
Query 1544 tgctcaaactctgattttctttcatttgtttttgttttat 1583
||||||||||| |||||||||| | ||||||||| |||
Sbjct 1558 TGCTCAAACTCAGATTTTCTTT--T--GTTTTTGTTATAT 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5