BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52460.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938125 jgi|Araly1|938125|scaffold_502316.1 1376 0.0
> Ahg938125 jgi|Araly1|938125|scaffold_502316.1
Length=929
Score = 1376 bits (745), Expect = 0.0
Identities = 853/903 (94%), Gaps = 15/903 (2%)
Strand=Plus/Plus
Query 1 ATGCCTTCTCCTCCGGAAGAAGAAACCCAACCCAAACCCGATACGGGTCCGGGTCAAAAC 60
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 21 ATGCCTTCTCCTCCAGAAGAAGAAACTCAACCCAAACCCGATACGGGTCCGGGTCAAACC 80
Query 61 TCCGAACGCGATATTAATCAACCACCACCACCTCCACCACAATCTCAACCGCCTCCACCG 120
||||||||||||| ||||||||||| || |||||| |||||||||||||||||||||
Sbjct 81 TCCGAACGCGATACTAATCAACCACAACAACCTCCGCCACAATCTCAACCGCCTCCA--- 137
Query 121 CAGACGCAACAGCAAACGTACCCGCCGGTAATGGGCTATCCAGGCTACCATCAACCGCCT 180
| ||||| | | | |||||||||||||||||||||||||||||||| ||| |||
Sbjct 138 C---CGCAA-A-C--A--TACCCGCCGGTAATGGGCTATCCAGGCTACCACCAA--GCC- 185
Query 181 CCACCATACCCAAATTATCCAAACGCACCTTACCAACAATACCCTTACGCACAAGCCCCA 240
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 186 CCACCATACCCAAATTATCCAAACGCTCCTTACCAACAATACCCTTACGCTCAAGCCCCA 245
Query 241 CCCGCTTCATATTACGGTTCATCTTACCCGGCTCAGCAAAATCCGGTTTACCAAAGACCA 300
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 246 CCCGCTTCATATTACGGGTCATCTTACCCGGCTCAGCAAAACCCGGTTTACCAAAGACCC 305
Query 301 GCTTCGTCCGGGTTCGTCAGAGGAATTTTCACCGGTTTAATCGTTTTAGTCGTCCTCCTC 360
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 306 GCTTCGTCCGGTTTCGTCAGAGGAATTTTCACCGGTTTAATCGTTATAGTCGTCCTCCTC 365
Query 361 TGCATCTCCACCACCATAACGTGGCTAGTCCTCCGTCCTCAAATACCGCTTTTCTCCGTA 420
||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct 366 TGCATCTCCACCACCATAACGTGGCTAATCCTCCGTCCTCGAATCCCGCTTTTCTCCGTA 425
Query 421 AACAATTTCTCAGTTTCCAATTTCAACGTAACCGGTCCGGTTTTCTCCGCGCAATGGACG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AACAATTTCTCAGTTTCCAATTTCAACGTAACCGGTCCGGTTTTCTCCGCGCAATGGACG 485
Query 481 GCGAATCTCACAATCGAGAATCAAAACACGAAATTGAAAGGCTACTTTGATCGAATCCAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 486 GCGAATCTCACAATCGAGAATCAAAACACGAAATTGAAAGGCTACTTTGATCGAATTCAA 545
Query 541 GGTTTAGTATACCACCAAAACGCGGTCGGAGAAGACGAATTTTTAGCGACGGCGTTTTTT 600
|||||| | || ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 546 GGTTTAATCTATCACCAAAACGCAGTCGGAGAAGATGATTTTTTAGCGACGGCGTTTTTT 605
Query 601 CAACCGGTTTTCGTGGAGACCAAGAAATCGGTTGTGATCGGAGAAACTTTGACCGCGGGA 660
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 606 CAACCGGTTTTCGTGGAGACCAAGAAATCGGTTGTGATCGGAGAAACATTAACGGCGGGA 665
Query 661 GATAAAGAACAACCGAAAGTTCCGAGTTGGGTTGTTGATGAGATGAAGAAAGAGAGAGAG 720
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 666 GATAAAGAACAACCGAAAGTTCCGAGTTGGGTTGGTGAAGAGATGAAGAAAGAGAGAGAG 725
Query 721 ACCGGAACGGTGACGTTTAGCCTGAGAATGGCCGTGTGGGTTACTTTTAAGACCGATGGT 780
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 726 ACCGGAACGGTGACGTTTAACCTGAGAATGGCCGTGTGGGTTACTTTTAAGACCCATGGT 785
Query 781 TGGGCGGCGCGTGAGAGCGGGCTTAAGGTGTTTTGCGGGAAATTAAAAGTTGGGTTTGAA 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TGGGCGGCGCGTGAGAGAGGGCTTAAGGTGTTTTGCGGGAAATTAAAAGTTGGGTTTGAA 845
Query 841 GGAATTTCTGGAAACGGTGCCGTTTTGTTGCCTAAGCCTCTTCCTTGTGTGGTTTACGTT 900
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 846 GGAAATTCTGGAAACGGTGCCGTTTTGTTACCTAAGCCTCTTCCTTGTGTGGTTTACGTT 905
Query 901 TGA 903
|||
Sbjct 906 TGA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5