BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52470.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485614 jgi|Araly1|485614|fgenesh2_kg.5__1606__AT3G52470.1 1125 0.0
Ahg482567 jgi|Araly1|482567|fgenesh2_kg.4__1627__AT2G35960.1 453 1e-126
Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176 231 5e-60
Ahg940071 jgi|Araly1|940071|scaffold_600615.1 226 3e-58
Ahg951862 jgi|Araly1|951862|scaffold_22200002.1 117 2e-25
> Ahg485614 jgi|Araly1|485614|fgenesh2_kg.5__1606__AT3G52470.1
Length=912
Score = 1125 bits (609), Expect = 0.0
Identities = 727/783 (93%), Gaps = 12/783 (2%)
Strand=Plus/Plus
Query 4 TTTCTTCCCATCGTCACTAGTCACGACC-ACACAAACaaaaa-aaaTATA-ACATTTAGA 60
|||||||||||| |||||| |||||||| | |||| ||||| ||| ||| | |||||||
Sbjct 1 TTTCTTCCCATCATCACTAATCACGACCTCCCCAAA-AAAAAGAAAGATATA-ATTTAGA 58
Query 61 GAGAGAGAAAGGTACAGC-AGTGGCAAACTCGTAAATAAAGAATGTCAAAAGATTGCGGT 119
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GAGAGAGAAAGGTACA-CTAGTGGCAAACTCGTAAATAAAGAATGTCAAAAGATTGCGGT 117
Query 120 AACCACGGTGGTGGCAAAGAAGTAGTCGTCCGGAAACTCTGCGCCGCCATAATCGCCTTC 179
|||||||| ||||||||||||| || ||||||| |||||||| ||||||||||||||||
Sbjct 118 AACCACGGCGGTGGCAAAGAAGCAGCCGTCCGGCGACTCTGCGGCGCCATAATCGCCTTC 177
Query 180 ATCGTAATAGTTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCCACTAAACCA 239
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 ATCATAATAGTTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCCACTAAGCCA 237
Query 240 AGATTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTCGCAACCAAACCTCCTT 299
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 238 AGATTCGTCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCTCAACCAAACCTCCTC 297
Query 300 ACTTCAAACTTCCAAGTCACAATCGCATCTCGTAACCCTAACTCCAAGATCGGAATCTAC 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTTCAAACTTCCAAATCACAATCGCATCTCGTAACCCTAACTCCAAGATCGGAATCTAC 357
Query 360 TACGACCGTCTCCACGTCTACGCTACATACATGAACCAGCAGATCACTCTACGTACGGCG 419
||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 358 TACGACCGTCTTCACGTCTACGCTACGTACCGGAACCAACAGATCACTCTACGTACGGCG 417
Query 420 ATTCCTCCGACGTATCAAGGCCACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCTACGGG 479
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 418 ATTCCTCCGACGTATCAAGGCCACAAAGAAGACAACGTTTGGTCACCTTTCGTCTACGGA 477
Query 480 ACTGCGGTTCCCATCGCACCTTACAACTCCGTCGCTTTGGGAGAGGAGAAAGATCGTGGA 539
|| || ||||| |||||||| || |||||||||||||||||||| || ||| |||||||
Sbjct 478 ACCGCCGTTCCGATCGCACCGTATAACTCCGTCGCTTTGGGAGATGACCAAGGTCGTGGA 537
Query 540 TTTGTAGGGTTGATGATACGCGCCGATGGGAC-CGTGAGGTGGAAAGTGAGGACTTTGAT 598
|| ||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||
Sbjct 538 TTCGTAGGGTTGATGATACGCGCCGATGGG-CACGTGAGATGGAAAGTGGGGACTTTGAT 596
Query 599 CACCGGAAAATATCATATCCATGTTCGGTGTCAGGCGTT-CATCAATCTTGGAAACAAAG 657
|||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||
Sbjct 597 CACCGGAAAATATCATATCCATGTTCGGTGCCCGGC-TTACATCAATCTTGGAAACAAAG 655
Query 658 CTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTACACGTTGGCTAATAAATGCAGTG 717
||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 656 CTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTATACGTTGATTACTAAATGCAGTG 715
Query 718 TGAACGTTTAGAAAGTTTGACGGCGTTAAGTTGCtttttttCTTGAAATTCACCAAACTT 777
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 716 TGAACGTTTAGAAAGTTTGACGGCGTTAAGTTGCTTTTTTTCTTGAACTT-ACCAAACTT 774
Query 778 CTT 780
|||
Sbjct 775 CTT 777
Score = 174 bits (94), Expect = 9e-43
Identities = 125/138 (91%), Gaps = 9/138 (7%)
Strand=Plus/Plus
Query 816 CTTTAAGATTTCACTACTTTTTGGTTGTTA-T-T--AAGCTTATTGTTGATTATAGAATT 871
||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||
Sbjct 780 CTTTAAGATTTCACTAC-TTTTGGTTGTTATTATAAAAGCTTATTGTTGATTATAGAATT 838
Query 872 ATTACAATCACGAAGGTCAGTGGTTGGATTTAACTGTAAATCCACTTTATAAAGTTGAAA 931
||||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 839 ATTACAACCACGACGGTCTGTGGTTGGATTTAATTGTAAATCCA----ATAAAGTTGAAA 894
Query 932 TAAAATGGAGGATTGGGT 949
||||||||||||||||||
Sbjct 895 TAAAATGGAGGATTGGGT 912
> Ahg482567 jgi|Araly1|482567|fgenesh2_kg.4__1627__AT2G35960.1
Length=754
Score = 453 bits (245), Expect = 1e-126
Identities = 520/648 (80%), Gaps = 37/648 (6%)
Strand=Plus/Plus
Query 101 AATGTCAAAAGATTGCGGTAACCA---CGGTGGTGGCAAAGAAGTAGTCGTCCG--GAAA 155
|||||| ||||||||||| ||||| ||| || ||| || || | |||| | | ||
Sbjct 82 AATGTCCAAAGATTGCGGGAACCACGGCGGCGGCGGCGGAGGAGGAACCGTCAGTCG-AA 140
Query 156 CTCTGCGCCGCCATAATCGCCTTCATCGTAATAGTTC-TAATCACCATCTTCCTAGTTTG 214
|||||| || || || | ||||||| | || | || | || || |||||||| |||||
Sbjct 141 -TCTGCGGAGCAATCATTGGCTTCATCATCATCG-TCTTGATAACAATCTTCCTCGTTTG 198
Query 215 GGTCATACT-CAGGCCCACTAAACCAAGATTCGTCCTCCAAGACGCCACCGTCTACGCCT 273
||| || || || || || |||||||||||| |||||||||||||||||||||||||||
Sbjct 199 GGTAATCCTCCA-ACCAACAAAACCAAGATTCATCCTCCAAGACGCCACCGTCTACGCCT 257
Query 274 TCAACCTCTCGCAACCAAACCTCCTTACTTCAAACTTCCA-AGTCACAATCGCATCTCGT 332
| |||||||||||||| ||||| || || |||||||| || | |||||||||| || |||
Sbjct 258 TTAACCTCTCGCAACCTAACCTACTCACCTCAAACTTTCAGA-TCACAATCGCTTCACGT 316
Query 333 AACC-CTAACTCCAAGA-TCGGAATCTACTACGACCGTCTCCACGTCTACGCTACATACA 390
|||| | ||||||| || ||||||||||||||||||| || ||||||||||||| |||
Sbjct 317 AACCGC-AACTCCA-GAATCGGAATCTACTACGACCGGCTTCACGTCTACGCTAGTTACC 374
Query 391 TGAACCAGCAGATCACTCTACGTACGGCGATTCCTCCGACGTATCAAGGCCACAAAGAAG 450
||||||||| |||||| ||||||| || |||||||||||||| |||||||| |||||||
Sbjct 375 GGAACCAGCAAATCACTTTACGTACAGCCATTCCTCCGACGTACCAAGGCCATAAAGAAG 434
Query 451 TCAACGTTTGGTCTCCTTTCGTCTACGGGA-CTGCGGTTCCC-ATCGCACCTTACAACTC 508
|||||||||||||||||| || ||||| | || || | ||| ||||| |||| |||| |
Sbjct 435 ACAACGTTTGGTCTCCTTTTGTATACGGAAACTCCG-T-CCCTATCGCTCCTTTCAACGC 492
Query 509 CGTCGCT-TTGGGAGAGGAG-AAAGATCGTGGATTTGT-AGGGTTGATGATACGCGCCGA 565
|| ||| |||| || ||| ||| |||| || ||||| | | ||||| |||||||||||
Sbjct 493 GGTGGCTCTTGGC-GACGAGCAAA-ATCGCGGGTTTGTCACG-TTGATTATACGCGCCGA 549
Query 566 TGGGAC-CGTGAGGTGGAAAGT-GAGGACT-TTGATCACCGGAAAATATCATATCCATGT 622
||| || |||||||||||| || | ||||| || || || || || |||||| ||| |||
Sbjct 550 TGG-ACGCGTGAGGTGGAAGGTCG-GGACTCTT-ATTACAGGGAAGTATCATCTCCTTGT 606
Query 623 TCGGTGTCAGGCGTTCATCAATCTTGGAA-ACAAAGCTGCTGGTGTTCTTGTCGGTGATA 681
||| |||| |||| ||| ||||| || | ||||| || || |||| |||||| || |
Sbjct 607 TCGTTGTCTCGCGTACATAAATCT-GGCTGATAAAGCCGCCGGAGTTCATGTCGGCGAAA 665
Query 682 ACGCCGTTAAGTACACGTTGG-CTAATAAATGCAGTGTGAACGTTTAG 728
||||||||||||||| ||||| | ||||| |||||||| || ||||||
Sbjct 666 ACGCCGTTAAGTACATGTTGGTC-AATAAGTGCAGTGTCAATGTTTAG 712
> Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176
Length=609
Score = 231 bits (125), Expect = 5e-60
Identities = 368/483 (76%), Gaps = 25/483 (5%)
Strand=Plus/Plus
Query 234 AAA-CCAAGATTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTC-G-CAA-CC 289
||| ||| | ||| |||||||||||||||||||||||||||||||| |||| | ||| ||
Sbjct 108 AAAGCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCC 167
Query 290 A---AACCTCCTTACTTCAAACTTCCAAGTCACAATCGCATCTCGTAACCCTAACTCCAA 346
| |||||| | || || ||||||||| |||| || | || || ||||||||| |||
Sbjct 168 ACCGAACCTCATCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACGACAA 227
Query 347 GATCGGAATCTACTACGACCGTCTCCACGTCTACGCTACATACATGAACCAGCAGATCAC 406
|||||| | ||||||||||| || ||||||||||||| ||| || ||| ||||||||
Sbjct 228 GATCGGCGTTTACTACGACCGCCTTGACGTCTACGCTACTTACCGGAGCCAACAGATCAC 287
Query 407 TCTACGTACGGCGATTCCTCCGACGTATCAAGGCCACAAAGAAGTCAACGTTTGGTCTCC 466
| | || || | || ||||| |||||||| || ||||||||||||||| | ||||| ||
Sbjct 288 TTTCCGAACATCAATCCCTCCCACGTATCAGGGACACAAAGAAGTCAACATCTGGTCGCC 347
Query 467 -TTTCGTCTACGGGAC-TGCGGTTCCCATCGCACCTTACAACTCCGTCGCTTTGGGA-GA 523
||| |||||||| || | || |||||||||| |||| ||| ||| | | | | | ||
Sbjct 348 GTTT-GTCTACGGAACCTCCG-TTCCCATCGCTCCTTTTAACGGCGTTGGTCTCG-ACGA 404
Query 524 GGAGAAAGAT--CGTG-GATTTGTAGGGTTGATGATACGCGCCGATGGGACCGTGAGGTG 580
|| |||||| || | | | || | ||||| || || || ||||| | || ||||
Sbjct 405 CGATAAAGATAACG-GCGCCAT-TATG-TTGATCATTCGTGCTGATGGTAGAGTTCGGTG 461
Query 581 GAAAGT-GAGGACTTTGATCACCGGAAAATATCATATCCATGTTCGGTGTCAGGCGT-TC 638
||| || | ||||||| |||||||| || |||||| | |||| ||| | ||||| |
Sbjct 462 GAAGGTTG-GGACTTTTATCACCGGGAAGTATCATCTTTATGTGAAGTGCCCGGCGTAT- 519
Query 639 ATCAATCTT-GGAAACAAAGCTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTACAC 697
|| || ||| || || |||||| | || ||| | |||| ||||||||||||||||| ||
Sbjct 520 ATTAA-CTTCGGTAATAAAGCTACCGGAGTTATCATCGGAGATAACGCCGTTAAGTATAC 578
Query 698 GTT 700
|||
Sbjct 579 GTT 581
> Ahg940071 jgi|Araly1|940071|scaffold_600615.1
Length=689
Score = 226 bits (122), Expect = 3e-58
Identities = 389/514 (76%), Gaps = 34/514 (7%)
Strand=Plus/Plus
Query 205 TCCTAGTTTGGGTC-ATAC-TCAGGCCCA-CTAAACCAAGATTCGTCCTCCAAGACGCCA 261
|||||||||||| | || | ||| ||| | |||||| | ||| |||||||||||||||
Sbjct 140 TCCTAGTTTGGG-CAATCCTTCA--ACCATCAAAACCACGCTTCATCCTCCAAGACGCCA 196
Query 262 CCGTCTACGCCTTCAACCTCT-C-GCAA-CCA---AACCTCCTTACTTCAAACTTCCAAG 315
|||||| | ||||||| ||| | |||| ||| |||||||| || ||||| ||||||
Sbjct 197 CCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTCCAAA 256
Query 316 TCACAATCGCATCTCGTAACCCTAACTCCAAGATCGGAATCTACTACGACCGTCTCCACG 375
|||| || | ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 257 TCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGAATCTACTACGACCGTCTTGACG 316
Query 376 TCTACGCTACATACATGAACCAGCAGATCAC-TCTACGTACGGCGATTCCTCCGACGTAT 434
|||||||| | ||| || ||| || ||||| | | || || |||| ||| |||| |||
Sbjct 317 TCTACGCTTCTTACCGGAGCCAACAAATCACTTTTCCG-ACTTCGATGCCTACGACTTAT 375
Query 435 CAAGGCCACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCTACGGG-ACTGCGGTTCCCAT 493
||||| ||||||||||||||||||||||||||||||||| || ||| | || ||| |
Sbjct 376 CAAGGACACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCGGTGGATACT-CTGTCCCCGT 434
Query 494 CGCACCTTACAACTCCGTCGCT-T-TGGGAG-AGGAGAA-AGATCGTGG-ATT-TGTAGG 547
|| ||||||||| || | | | | | | | |||| | | | ||||| | | | |
Sbjct 435 AGCTCCTTACAACGCCTT-G-TATCTCG-ATCAGGACCATACA-CGTGGCACGATC-ATG 489
Query 548 GTTGATGATACG-CGCCGATGGGACCGTGAGGTGGAAAGTGAGGA-CTTTGATCACCGGA 605
||| || | | | || || | || | |||||||| || | || |||||||||
Sbjct 490 -TTGGTGCTTCATCTT-GACGGCAGAGTTCGTTGGAAAGTC-GGTTCCTTCATCACCGGA 546
Query 606 AAATATCATATCCATGTTCGGTGTCAGGCGTTCATCAATCTT-GGAAACAAAGCTGCTGG 664
||||||||| |||| ||| | |||| |||||| ||||| ||| || || | ||| | ||
Sbjct 547 AAATATCATCTCCACGTTAGATGTCCGGCGTTTATCAA-CTTTGGGAATAGTGCTTCCGG 605
Query 665 TGTTCTTGTCGGTGATAACGCCGTTAAGTACACG 698
||| | ||||| ||||||||||||||||||||
Sbjct 606 AGTTATCGTCGGAAATAACGCCGTTAAGTACACG 639
> Ahg951862 jgi|Araly1|951862|scaffold_22200002.1
Length=515
Score = 117 bits (63), Expect = 2e-25
Identities = 132/164 (80%), Gaps = 9/164 (5%)
Strand=Plus/Plus
Query 234 AAA-CCAAGATTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTC-G-CAA-CC 289
||| ||| | ||| |||||||||||||||||||||||||||||||| |||| | ||| ||
Sbjct 38 AAAGCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCC 97
Query 290 A---AACCTCCTTACTTCAAACTTCCAAGTCACAATCGCATCTCGTAACCCTAACTC-CA 345
| |||||||| || || ||||||||| |||| | | || ||||||||||| | ||
Sbjct 98 ACCGAACCTCCTCACCTCCAACTTCCAAATCACTCTTTCTTCCCGTAACCCTAA-TGACA 156
Query 346 AGATCGGAATCTACTACGACCGTCTCCACGTCTACGCTACATAC 389
||||||| | ||||||||||| || | ||||||||||| |||
Sbjct 157 AGATCGGCGTTTACTACGACCGCCTTGAAGTCTACGCTACCTAC 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5