BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52480.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485615 jgi|Araly1|485615|fgenesh2_kg.5__1607__AT3G52480.1 966 0.0
> Ahg485615 jgi|Araly1|485615|fgenesh2_kg.5__1607__AT3G52480.1
Length=700
Score = 966 bits (523), Expect = 0.0
Identities = 652/713 (91%), Gaps = 13/713 (2%)
Strand=Plus/Plus
Query 1 ACAAACGAAACGACGCAGTATTAAGGTTACTCTCTCTCAAACTCTCGTCTCCTAAATGGG 60
||||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||
Sbjct 1 ACAAACGAAACGACGCAGTTTTAAGGTTAATCTCTCTCAAACTCT-GTCTACTAAATGGG 59
Query 61 TCTTACCCCAACTGCAACCCTACTCGTCGCTGTTTTCGCGTTTTGCCTCGTCGCTGTAAC 120
||||| || ||| |||| | |||||||||| |||||||||||||| ||||| ||||||||
Sbjct 60 TCTTAGCCAAACCGCAATCGTACTCGTCGCGGTTTTCGCGTTTTGTCTCGTAGCTGTAAC 119
Query 121 GGCGCAGTTCGCCTACGTTTTGTGGTGGAAACGTCGGTTCCGTCGTCGGAGTATCGCCGG 180
||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 GGCACAGCTCGCCTACGTTTTGTGGTGGAAACGTCGGTTTCGTCGTCGGAGTATCGCCGG 179
Query 181 ATCAGAACGCGACGCTTTTTCCTCTCGCGGTGGTGACCTAACGGCTACACCACCGCCATC 240
|||||||| ||||||||| ||||| ||||| ||||||| ||||||||||||||||| ||
Sbjct 180 ATCAGAACTCGACGCTTTCTCCTCCCGCGGCGGTGACCCGACGGCTACACCACCGCCTTC 239
Query 241 GAAAGAGCTTCTTTACTTCTTCTTGTTCTGTCTCGAAAACAAACAGTTCAGAATAGGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 GAAAGAGCTTCTTTACTTCTTCTTGTTCTGTCTCGAAAACAAACAGTTCCGAATAGGATC 299
Query 301 TGCCACCGCTCCGCCGCTCCCTGCAGCCGCACCGCCGGTTAATGACGTGGCATCAAAGTG 360
||||| |||||||| ||||||||||| || || ||||||| ||||||||| || |||||
Sbjct 300 CGCCACAGCTCCGCCTCTCCCTGCAGCTGCTCCTCCGGTTAGTGACGTGGCGTCGAAGTG 359
Query 361 GTCAATAAACGGAGAAAATTTACTTTGCGGACCTTCGGAGACTTTGTTTACCATCGCTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 GTCAATAAACGGAGAAAATTTACTTTGCGGACCTTCGGAGACTTTGTTTACAATCGCTGA 419
Query 421 AGACTATACTAGCGAGTCCGATCATCGGACGGGTGAGATTGATCCACGTGGAAGCATCTT 480
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 AGACTATACTAGCGAGTCCGATCATCGCACGGGTGAGATTGATCCACGTGGAAGCATCTC 479
Query 481 TACAGAGGATCATGTAAAGGATGATGAAGTGGAAGAGGAGGTAGTCGCGACGGATATAAG 540
||| |||||| |||||||||||||||||||| |||||||| | |||| ||||||||||||
Sbjct 480 TACTGAGGATAATGTAAAGGATGATGAAGTGAAAGAGGAGATTGTCGTGACGGATATAAG 539
Query 541 CGACGACGAGGTTGACTTTAGCCACTATAATCAAACTACGCCGTTTTCTACTCCATGTGC 600
||||||||||||||||||||| | | | | | |||||||||||||||||||||
Sbjct 540 CGACGACGAGGTTGACTTTAG--A--A----CGA-C---GCCGTTTTCTACTCCATGTGC 587
Query 601 TTCCCCACCGTTTTACACGCCGTCTCCTTCTCCGATTCGTGATGATCTCTCTAAGACGGT 660
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 588 TTCGCCGCCGTTTTACACGCCGTCTCCTTCTCCGATTCGTGATGATCTCTCTAGGACGGT 647
Query 661 ACGTGAGGAGAGTGTGTACGGCTGAGATAGGTTTAGTTCTCCGATTAGCCGGG 713
| |||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 648 AGGTGAGGAGCGTTTGTACGGCTGAGATAGGTTTAGTTCTCCGATTAACCGGG 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5