BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52500.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485617 jgi|Araly1|485617|fgenesh2_kg.5__1609__AT3G52500.1 2283 0.0
> Ahg485617 jgi|Araly1|485617|fgenesh2_kg.5__1609__AT3G52500.1
Length=1659
Score = 2283 bits (1236), Expect = 0.0
Identities = 1450/1555 (93%), Gaps = 7/1555 (0%)
Strand=Plus/Plus
Query 212 TAA-AAGGAAGAAGAAAGTCACAGAGATCGAACATGAttctccactttccacttctttgt 270
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 TAATAATGAAGAAGAAAGTCACAGAGATCGAACATGATTCTCCACTTTCCACTTCTTTGT 167
Query 271 cttctttcttctccttctcacttacttAACCCATAAGCCATCAATCCCAAACACACCATT 330
||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 168 CTTCTTTCTTCTCCTTCTCACTTACTTAAGCCATAAGCCATCAAACCCAAAAACACCACA 227
Query 331 ACAATGGcttcttctatcttcttcttcttccttatcttcctctccgtcgtctccgccgtc 390
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ACTATGGCTTCTTCTTTCTTCTTCTTCTTCCTTATCTTCCTCTCCGTCGTCTCCGCCGTC 287
Query 391 aaactacctctctctcccttctcCCACTCCGACCAATCACCAAAAGACCCTTACCTCTCT 450
||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 288 AAATTACCTCTTTCTCCCTTCTCCCACTCCGACCAATCACCTAAAGATCCTTACCTCTCT 347
Query 451 CTCCGTCGTCTCGCTGAATCCTCAATCGCTAGAGCTCATAAACTCAAACACGGCACCTCA 510
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 348 CTCCGTCGTCTCGCTGAATCCTCAATCGCCAGAGCTCATAAACTCAAACACGGCACTTCC 407
Query 511 ATAAAACCCGACGAAGATGCTCTCTCCTCCACCA-CCACCGCATCCGCCACCGTCGTGAA 569
|| |||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||
Sbjct 408 ATCAAACCCGACGAAGAAGCTCTCTCCTCCAC-AGCCACCACATCCGCCACCGTCGTGAA 466
Query 570 ATCTCCTCTCTCTGCTAAAAGCTACGGCGGATACTCAGTCTCTCTCAGCTTCGGCACACC 629
||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 467 ATCTCCTCTTTCACCTAAAAGCTACGGTGGATACTCAGTCTCTCTCAGCTTCGGCACACC 526
Query 630 GTCGCAAACAATCCCATTCGTTTTCGATACCGGAAGCAGTCTCGTTTGGCTACCTTGTAC 689
||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||
Sbjct 527 GTCGCAAACAATCCCATTCGTTTTCGATACCGGAAGCAGTCTCGTCTGGTTCCCATGTAC 586
Query 690 CTCAAGATATCTCTGCTCCGGTTGCGATTTCTCCGGTTTGGATCCGACTCTAATCCCTAG 749
||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 587 CTCGAGATATCTCTGCTCCGATTGCAATTTCTCCGGTTTGGATCCGACTCAAATCCCTAG 646
Query 750 ATTTATCCCCAAGAACTCTTCCTCTTCGAAGATTATCGGGTGTCAGAGTCCAAAATGTCA 809
||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||
Sbjct 647 ATTTATCCCCAAGAACTCTTCCTCTTCCCGGGTTATCGGGTGTCAGAATCCGAAATGTCA 706
Query 810 GTTTCTATACGGACCCAATGTTCAATGCAGAGGATGTGACCCGAATACCCGAAACTGCAC 869
|||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 707 GTTTCTATTCGGAGCCAATGTCCAATGCAGAGGATGTGACCCGAATACCCGAAATTGCAC 766
Query 870 CGTCGGTTGTCCACCGTACATTCTTCAATACGGATTAGGATCAACGGCTGGGGTTTTAAT 929
|||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct 767 CGTCTCTTGTCCACCGTACATTCTTCAATACGGATTAGGATCGACGGCTGGGATTTTATT 826
Query 930 AACCGAAAAGCTTGATTTCCCGGATCTAACCGTACCCGATTTCGTAGTCGGATGTTCAAT 989
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 827 ATCCGAAAAGCTTGATTTCCCGGATCTAACAGTACCCGATTTCGTTGTCGGATGTTCAAT 886
Query 990 TATCTCCACCCGACAACCCGCTGGTATCGCTGGGTTTGGGCGAGGACCCGTATCGCTTCC 1049
||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 887 TATCTCCACCCGAAAACCCGCTGGTATCGCCGGGTTTGGGCGAGGATCCGAATCGCTTCC 946
Query 1050 TTCACAAATGAATCTCAAGAGATTCTCTCACTGTTTGGTTTCTCGTCGGTTTGACGATAC 1109
|||||||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 947 TTCACAAATGAAGCTTAAGAAATTTTCTCACTGTTTGGTTTCTCGTCGGTTCGACGATAC 1006
Query 1110 CAACGTAACCACCGATCTTGATTTAGATACCGGATCGGGTCATAATTCCGGGTCTAAAAC 1169
|||||| || ||||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 1007 CAACGTCACTACCGATCTTGATTTAGATACCGGGTCGGGTCATAAATCCGGTTCGAAAAC 1066
Query 1170 TCCGGGTCTCACATACACGCCGTTTCGGAAAAATCCCAATGTCTCCAACAAAGCTTTTCT 1229
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1067 TCCGGGTCTCACCTACACGCCGTTTCGGAAAAATCCCAATGTCTCCAACACAGCTTTTCT 1126
Query 1230 CGAGTATTATTACCTCAATCTCCGGCGAATCTACGTCGGAAGAAAGCACGTGAAGATTCC 1289
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1127 CCAGTATTATTACCTCAATCTCCGGCGAATCTACGTCGGAAGCAAGCACGTGAAGATTCC 1186
Query 1290 GTATAAGTATCTCGCGCCGGGAACTAACGGAGACGGAGGATCCATTGTTGATTCCGGATC 1349
||| |||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1187 GTACAAGTTTCTCGCTCCGGGAACTAACGGAAACGGAGGATCCATCGTTGATTCCGGATC 1246
Query 1350 TACATTCACTTTCATGGAGCGACCCGTTTTCGAGCTCGTTGCTGAAGAATTCGCTTCACA 1409
||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1247 TACATTCACATTCATGGAGCGACCCGTTTTCGAGCTAGTAGCTGAAGAATTCGCGACACA 1306
Query 1410 GATGTCGAACTACACTCGTGAGAAAGACTTGGAGAAGGAAA-CAGGACTTGGACCGTGTT 1468
||||||||| |||||||||||||||||||| |||||| | | ||| ||| ||||||||
Sbjct 1307 GATGTCGAATTACACTCGTGAGAAAGACTTAGAGAAG-ATCTCCGGAATTGCACCGTGTT 1365
Query 1469 TTAATATCTCCGGGAAGGGAGATGTGACGGTGCCGGAGCTGATTTTTGAGTTTAAAGGTG 1528
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TTAATATCTCCGGCAAGGGAGATGTGACGGTGCCGGAGCTGATTTTTGAGTTTAAAGGTG 1425
Query 1529 GAGCGAAGTTGGAATTGCCGTTATCCAATTACTTCACGTTCGTTGGGAATACTGATACCG 1588
||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||||| |
Sbjct 1426 GAGCGAAAATGGAATTGCCGTTATCGAATTACTTCTCGTTCGTTGGGAATGCTGATACTG 1485
Query 1589 TTTGTCTTACGGTGGTTTCGGATAAAACCGTTAATCCCTCCGGCGGGACTGGACCGGCGA 1648
||||||| ||||||||||| ||||| |||||||||||| |||||||||||| |||||||
Sbjct 1486 TTTGTCTCACGGTGGTTTCCGATAACACCGTTAATCCCGGCGGCGGGACTGGTCCGGCGA 1545
Query 1649 TAATTCTGGGGAGTTTCCAGCAACAGAACTATTTAGTTGAATACGATTTGGAGAATGACA 1708
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TAATTCTGGGAAGTTTCCAGCAACAGAACTATTTAGTTGAATACGATTTGGAGAATGACA 1605
Query 1709 GGTTTGGGTTCGCGAAG-AAGAAGTGTAGCCCGTGAGTTTTCAGGGGTAAATTTG 1762
||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1606 GGTTTGGGTTCGCGAAGGAA-AAGTGTAGCCCGTGAGTTTTCAGGGGTAAATTTG 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5