BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52510.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938134 jgi|Araly1|938134|scaffold_502325.1 316 1e-85
Ahg938138 jgi|Araly1|938138|scaffold_502329.1 195 5e-49
Ahg898136 jgi|Araly1|898136|Al_scaffold_0005_2102 163 1e-39
> Ahg938134 jgi|Araly1|938134|scaffold_502325.1
Length=1076
Score = 316 bits (171), Expect = 1e-85
Identities = 391/493 (79%), Gaps = 31/493 (6%)
Strand=Plus/Plus
Query 77 TGCTTCGCAAAGTTTGGGAGGTGAGCAAGGA-AGATGGGCAGA-TGAGATCCGAGCATCA 134
||||| ||| ||||||||||| |||||| || ||| ||||| | |||||| ||||||||
Sbjct 520 TGCTTAGCACAGTTTGGGAGGAGAGCAA-GAGAGA-GGGCATAGTGAGATTCGAGCATC- 576
Query 135 AG-TGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGCAACGCTCCTCCTC 193
|| ||||||||||||||||||||||||||||||||| |||||||||| | | | ||
Sbjct 577 AGATGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAACACTTATAGCA-C-CA--T--TC 630
Query 194 CTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTGTACTATGGAGCAG 253
|||||| | ||||| ||||||||||||||||||| | ||| | ||||| ||||||||
Sbjct 631 CTCCTC--C-TCCTTACTCACAAGGTATCTCCATCGATGGTGTTTTGTATTATGGAGC-- 685
Query 254 CTTGGGTTGATGCA-AATAAATGTGTGCTCGTGAGTTTTGACTTGACTTTTGAAGAATTC 312
|||||||||| | |||| |||||||||| |||||||| |||||| || |||||| ||
Sbjct 686 -TTGGGTTGATA-AGAATAGATGTGTGCTCATGAGTTTTAACTTGAGTTCTGAAGAGTTT 743
Query 313 AATTTGATTGAGTTACCTGTAGAGGCTGGTATCATTTGGCACTC-ATATCGTGCTAACCT 371
||||||||||| |||| || |||||||| ||||| |||||| | | ||| || || ||
Sbjct 744 AATTTGATTGAACTACCCGTTGAGGCTGGCATCATCTGGCACACGAC-TCGCGCGAATCT 802
Query 372 CGTTAACTACAGAGACAAATTAGA-TATTTTCGAATACTCTAAACTTGCGGT-TGATGCG 429
| | |||||||||| ||||||| | | |||| || ||||| | ||||| | |||||||
Sbjct 803 CATCAACTACAGAGGCAAATTA-ACTGTTTTTGAGTACTCCCGATTTGCG-TCTGATGCG 860
Query 430 AGTGTAGACCTAAGGGTTATGGAGGATGTGAAGAAGAAGAAGAAGTGGTCaaaaaaaaCT 489
|| || || || ||||||||||| ||| | | |||||| ||||||||||| || |||
Sbjct 861 AGCGTGGATTTATGGGTTATGGAGAATGC-AGG--GAAGAAAAAGTGGTCAAACAAGACT 917
Query 490 TTGGTCTTGCCACTTGAC-CAAATGAATGTTGTCCATGGCGATGACTTGGTGCTGCCCGG 548
|||| ||||| ||| | || |||||| ||| || | ||||| | |||| | ||| ||
Sbjct 918 GTGGTATTGCCTCTTT-CTCAGATGAATTTTGCCCCTAGCGATAAGTTGGGGATGCAAGG 976
Query 549 CACGAGTCGCTGC 561
|||||| || |||
Sbjct 977 CACGAGCCGTTGC 989
> Ahg938138 jgi|Araly1|938138|scaffold_502329.1
Length=856
Score = 195 bits (105), Expect = 5e-49
Identities = 171/202 (85%), Gaps = 7/202 (3%)
Strand=Plus/Plus
Query 121 AGATCCGAGCATCAAGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGC 180
||||| || ||||| || |||||||||||||||||||||| ||||||||| || | |||
Sbjct 661 AGATCAGAACATCAGGTTTTGGTACTTGGTCCTGGAGCTTCTTGGAGAAGCACCCAAAGC 720
Query 181 AACGCTCCTCCTCCTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTG 240
| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 CGCACTCCTCCTCCTGCTCATCATCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTG 780
Query 241 TACTATGGAGCAGCTTGGGTTGATGCAAATAAATGTGTG-CTCGTGAGTTTTGACTTGAC 299
|| |||||||| || || |||| || || |||||| || ||| ||||||| |||| |||
Sbjct 781 TATTATGGAGC--CT-GGCTTGAAGCCAACAAATGT-TGGCTCATGAGTTTGGACT-GAC 835
Query 300 TTTTGAAGAATTCAATTTGATT 321
|| ||||| | |||||| ||||
Sbjct 836 TTCTGAAGGAGTCAATT-GATT 856
> Ahg898136 jgi|Araly1|898136|Al_scaffold_0005_2102
Length=1167
Score = 163 bits (88), Expect = 1e-39
Identities = 149/178 (84%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 77 TGCTTCGCAAAGTTTGGGAGGTGAGCAAGGAAGATGGGCAG--ATGAGATCCGAGCATCA 134
||||| ||| ||||||||||||| || |||| | | | || | | ||||||||||||
Sbjct 500 TGCTTAGCATAGTTTGGGAGGTGGGCGGGGAA-AAGAG-AGTTCTCAAATCCGAGCATCA 557
Query 135 AGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGCAACGCTCC-TCCTC 193
||||||||||||||||||||||||||||||||||| ||| | |||| | ||| |||||
Sbjct 558 AGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAACACTCAAAGCACCA-TCCCTCCTC 616
Query 194 CTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTGTACTATGGAGC 251
|||||||| |||||| | |||||||| |||||||||||||| | ||||| ||||||||
Sbjct 617 CTCCTCATTGTCCTTACACACAAGGTTTCTCCATCAACGGTGTCTTGTATTATGGAGC 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5