BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52520.1

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485618 jgi|Araly1|485618|fgenesh2_kg.5__1610__AT3G52520.1         433    6e-121


> Ahg485618 jgi|Araly1|485618|fgenesh2_kg.5__1610__AT3G52520.1
Length=372

 Score =  433 bits (234),  Expect = 6e-121
 Identities = 351/402 (87%), Gaps = 30/402 (7%)
 Strand=Plus/Plus

Query  1    ATGGAAGCTGAGAATTTGATGAATCTTTCTCTTCTCCAACGCAGAAACGGCGCCGTTTCA  60
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGGCTGAAAATTTGATGAATCTTTCTCTTCTCCAACGCAGAAACGGCGCCGTTTCA  60

Query  61   CAAACCCTAGATTTAGAGCTCGTGTCCGTCAACAAATCCTCCGAGGATCCTCTTCCATGT  120
            ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct  61   CAAACCCTAGACTTAGAGCTCGCGTCCGTCAACAAATCCTCCGATGATCCTCTTCCATGT  120

Query  121  TACACTTCCCTCAAAGACATCCTCCCTTCCTCCTCCACCACCGTCGATTCCCCCGCCATA  180
            ||||| |||||||||||||   | || ||| ||| | || || || |  || |||     
Sbjct  121  TACACCTCCCTCAAAGACA---T-CC-TCC-CCT-C-CC-CC-TCCA--CCACCG-----  163

Query  181  TCCTTTGCTGTCGCCTCCGCTGTATCAGGTCCCACCATCACGATCCGCAATCGCCTTGTA  240
            | |   | | || || | ||   |||    |||||||||  |||||| ||||||||||||
Sbjct  164  T-C---GAT-TC-CC-CTGC--CATC----CCCACCATCTTGATCCGTAATCGCCTTGTA  210

Query  241  AAGCAAGCTGCTTGCTCCTACCTTCAGCCTTCTActccaactccttcctccaacccttca  300
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  211  AAGCAAGCCGCTTGCTCCTACCTTCAGCCTTCTACTCCAACTCCTTCCTCTAACCCTTCA  270

Query  301  ttcctccgccgtgtctcctcctccttcatccgcctcgtctccgCCTTCTTTGATGCTCTC  360
            ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  271  TTCCTCCGCCGTGTCTCCTCCTCCTTCCTCCGCCTCTTCTCCGCCTTCTTTGATGCTCTC  330

Query  361  CTCCGCATCTTCCCATCTCCTCAGAAAATCTTTAGGGCTTAG  402
            ||| ||||||||||||||||||||||||||||||  ||||||
Sbjct  331  CTCTGCATCTTCCCATCTCCTCAGAAAATCTTTATAGCTTAG  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14422812642


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5