BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52525.1

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938136 jgi|Araly1|938136|scaffold_502327.1                        737    0.0  


> Ahg938136 jgi|Araly1|938136|scaffold_502327.1
Length=520

 Score =  737 bits (399),  Expect = 0.0
 Identities = 457/485 (94%), Gaps = 3/485 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGACTAAAAGCAAGAAGAAGATCCTGAAGACTGTATCTGTTGTCGACATCAGCTGC  60
            |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  21   ATGGCGGCTAAAAGCAAGAAGAAGATCCTGAAGACTGTCTCTGTTGTCGACATCAGCTGC  80

Query  61   GGCAACTGTATAAAACCAACTTTCGCCTCTATTTTCAACTTTTTCTCCAAAAAGCCTAAA  120
            |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||
Sbjct  81   GGCAACTGTATAAAACCAACATTCTCCTCTATTTTCCACTTTTTCTCCAAAAAGCCCAAA  140

Query  121  CGTCCCTCGTCTACTTACCGTCACTGCCACTCCTCCATCTCCTCCGCCACACCCTCCTCC  180
            |||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  141  CGTCCCTCCTCTAATTACCGTCACTGTCACTCCTCCATCTCCTCAGCCACACCCTCCTCC  200

Query  181  ACGCCTTTGGCCACCGCAT-CCGTCGCCGTGGAGAAAGATTCTGACGATCCGTACCTAGA  239
            || ||  | |||||||| | || ||||||| ||||||||||| |||||||| ||||||||
Sbjct  201  ACACCGCTAGCCACCGC-TGCCATCGCCGTCGAGAAAGATTCCGACGATCCTTACCTAGA  259

Query  240  TTTCCGGCAGTCTATGCTTCAAATGATACTAGAGAACCAGATTTACTCGAAAGATGAACT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  TTTCCGGCAGTCTATGCTTCAAATGATACTAGAGAACCAGATTTACTCGAAAGATGAACT  319

Query  300  TAGAGAGCTTCTTCAATGTTTCCTCAGCCTCAATTCTCACTATCATCACGGCATCATCGT  359
             |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct  320  CAGAGAGCTTCTTCAGTGCTTCCTCAGCCTCAATTCACACTATCATCACGGCATCATCGT  379

Query  360  CCGTGCCTTCTCGGAAATATGGGAAGACGTTTCCTCCGCCGCTGCTTCCGCCGTCGAAGC  419
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  380  TCGTGCCTTCTCGGAAATATGGGAAGACGTTTCCTCCGCCGCCGCTTCCGCCGTCGAAGC  439

Query  420  GTCCCCTCTCATCACCCGTCATGTGTCACGTGCGTCACGTGATTACTATAACTATTACTA  479
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  440  GTCCCCTCTCTTCACCCGTCATGTGTCACGTGCGTCACGTGATTACTATAACTATTACTA  499

Query  480  G-CTA  483
            | |||
Sbjct  500  GGCTA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29659629426


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5