BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52540.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938143 jgi|Araly1|938143|scaffold_502334.1 1242 0.0
> Ahg938143 jgi|Araly1|938143|scaffold_502334.1
Length=886
Score = 1242 bits (672), Expect = 0.0
Identities = 807/871 (93%), Gaps = 13/871 (1%)
Strand=Plus/Plus
Query 286 AATGGTAAGGAAAATGAAACTCCCATTTCTAAACAAGAACACATCATCTTCATCATTTTC 345
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 20 AATGGTAAGGAAAATGAAATTCCCATTTCTAAACAAGAACACTTCATCTTCATCATTTTC 79
Query 346 TTCAAATTCATCATCTTCTTCCTCTTCGTGGCCATGGCCTTCCTCTCATCAACAAAACCT 405
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 80 TTCAAATTCATCATCTTCTTCCTCTTCATGGCCATGGCCTTCTTGTCATCAACAAAACCT 139
Query 406 TAAAACAA---TATCTTCCAAAGCTTCCTTCATCGTTAACAAACCTAAAGATGTCTACGA 462
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 140 TAAAACAACAATATCTTCCAAAGCTTCCTTCATCGTTAACAAACCTAAACATGTCTACGA 199
Query 463 ACCCGAGCCACCACCGAGAAGCTTctcctcctccccctcctcctcctcctactcttcctt 522
| ||||||||||||| |||||||||||||| || ||||| | ||||||||||| |||||
Sbjct 200 ATCCGAGCCACCACCAAGAAGCTTCTCCTCATCACCCTC-T--TCCTCCTACTCCTCCTT 256
Query 523 ctcctcTACAAGCCATGCTATAGAAAATCCACCAGAGATAGAGTCTATAGAGAATGTGAT 582
||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||
Sbjct 257 CTCCTCTACCAGCCATGCCATGGAAAATCCTCCGGAGATAGAGTCTATAGAGAATGTGAT 316
Query 583 TAAAGG-ACTAAAATCATCGAAGAGACTCATCTTTGAACGGAGAGGAACATCGAACTCTA 641
||||| | ||||||||||||| |||||||| || |||| ||||||||||||||||||||
Sbjct 317 CAAAGGGA-TAAAATCATCGAAAAGACTCATATTCGAACAGAGAGGAACATCGAACTCTA 375
Query 642 TACTCGAAGAAGCTACCAAGAGAGACGATCATGAAGAAGAAGAGGACGGTTTAATGCTCT 701
|||||||||| || ||||||||||| ||||| ||||||||||| ||| || | ||||||
Sbjct 376 TACTCGAAGACGCCACCAAGAGAGAAGATCACGAAGAAGAAGAAGAC--TTCA-TGCTCT 432
Query 702 TGTCCTTGGAGTCAAACGATCCTTACACTGATTTCAAGAACTCAATGGAAAAGATGGTTG 761
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 433 TGTCCTTGGAATCAAACGATCCTTACTCTGATTTCAAGAACTCAATGGAAAAGATGGTTG 492
Query 762 AAGTACACGTGCTTCATCATGACTGGATAAGCCTGGAGAAACTTCTCTTTTGGTTCTTGA 821
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 493 AAGCACACGTGCTTCATCATGACTGGATAAGCCTAGAGAAACTTCTCTTTTGGTTCTTGA 552
Query 822 AAGTCAACGTCAAGGCAAGCCATAGATACATCTTCGCCGCCTTTGTCGATTTGGTCTTAA 881
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 553 AAGTCAACGTCAAGACCAGCCATAGATACATCTTCGCCGCCTTCGTCGATTTGGTCTTAA 612
Query 882 ACTTAGCAGTAGGGCCTTCTAAAGATGTTG-CTGGAGAACCTAATTCCGACGTCGTCGTG 940
||||||||||||| |||||||||||||| | | ||||| ||||||||||||||||| ||
Sbjct 613 ACTTAGCAGTAGGACCTTCTAAAGATGTCGTC-GGAGAGCCTAATTCCGACGTCGTAGTC 671
Query 941 GAGGATTCTCTTTCATCTTCGTGGCCGGTCTCGTTGTACTCGTCCTCCGATGAGAATTCG 1000
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 672 GAGGATTCTCTTTCATCTTCGTGGCCGGTCTCCTTGTACTCATCCTCCGATGAGACCTCG 731
Query 1001 TCGACGTCCGTACGATTCTTGCCGGAGACTTCGATAGGCGAGAAGGGTAGAGACGTTTGT 1060
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 732 TCGACGTCCGTACGACTCTTGCCGGAGACTTCGATAGGCGAGAAGAGTAGAGACGTTTGT 791
Query 1061 TGTTTATCGTCGTTGTTTGAGTTAGAAGAAAAGATTAAAGACAATATTGATCCAAATGAT 1120
||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| |
Sbjct 792 TGTTTATCGTCATTGTTTGAGTTAGAAGAGAAGATTAAAGACAACATTGATTCAAATGGT 851
Query 1121 TATGTATCTTCTTAATTTCTTCATTTGATAA 1151
||||||||||||||||| |||||||||||||
Sbjct 852 TATGTATCTTCTTAATTCCTTCATTTGATAA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5