BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52550.1
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938144 jgi|Araly1|938144|scaffold_502335.1 776 0.0
Ahg938143 jgi|Araly1|938143|scaffold_502334.1 99.0 5e-20
> Ahg938144 jgi|Araly1|938144|scaffold_502335.1
Length=586
Score = 776 bits (420), Expect = 0.0
Identities = 535/587 (91%), Gaps = 22/587 (4%)
Strand=Plus/Plus
Query 3 AACAACAAAGGTGGAAAAATTATGAAAGTCCCATTTTTAAACAAGAGTTTTTCATCTTCA 62
||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AACAACAAAGGGGGAAAAA-AATGAAAGTCCCATTTTTTAACAAGAGTTTTTCATCTTCA 59
Query 63 TGTTATTCAAATTCAAATTCATCATCATGGGGATGGCCTTCTTGTCACCAAAACCCTAGA 122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 TGTTATTCAAATTCAAATTCATCATCATGGGCATGGCCTTCTTGTCACCAAAACCCTAGA 119
Query 123 ACTCAATCTTTCAGAATCACCATCAGCACAATCAACCCTTATGACGCCgaagatgaagag 182
|| |||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 120 ACACAATCTTTCAGAGTCACCATCAGTGCAATCAACCCTAATGACGTCGAAGATGAAGAG 179
Query 183 gaggaggaggataaggaaga-g-a-agga-ga--aggaaaaaaggga-gaatgaaaagga 235
|||||||||||||||||||| | | |||| || ||||||| ||||| ||| | |||||
Sbjct 180 GAGGAGGAGGATAAGGAAGAGGAAGAGGAGGAGGAGGAAAAGAGGGAGGAA-GGAAAGG- 237
Query 236 agaggaggaggaggaaaaTTC-GCTTCCTGGCATCATGAT-TCCTACATCATCATCCTCC 293
| | |||||||| ||||| || |||||||| |||||| || |||| | |||| ||||||
Sbjct 238 A-A-GAGGAGGATGAAAA-TCTGCTTCCTGACATCATTATCTCCT-CCCCATCCTCCTCC 293
Query 294 ATCTCATCCACCATCGACACCATAGAAGAGGTGCCGGAGACCGAGTCCATAGAGAATGTG 353
|||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 294 ATCTCATCCAACATCGACGCCATAGAAGAGCTGCCGGAGACCGAATCCATAGAGAATGTG 353
Query 354 ATCAAAGGGATAAAATCATCAGAAAGACTCATCTTTGAACGTAAAGGAGAATCAAACTCT 413
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 354 ATCAAAGGGATAAAATCATCAAAAAGACTCATCTTTGAACGTAAAGGAGAATCAAACTCA 413
Query 414 ATTCTTGAAGAGATGAGGAACAAGGATTCATGCACTTGTCCTTGGAATCCATCCACACTT 473
||||| ||||||||||||||||||||||||| | ||||||||||||||||| | ||||||
Sbjct 414 ATTCTCGAAGAGATGAGGAACAAGGATTCATTCTCTTGTCCTTGGAATCCAACTACACTT 473
Query 474 TCTCTAATTTCAAGTGGTTCATGGTGGAGGTGGTTGCGGTACACTCGCTT---CGC---T 527
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 474 TCTCTAATTTCAAGTGGTTCATGGTGGAGGTGGTTGCGGTACACTCGCTTTATCGCGGCT 533
Query 528 ACATCCAATTGTATCGTGAAAACTACTGAATAGATCATTGATATATA 574
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ACACCCAATTGTATCGTGAAAACTACTGAATAGATCATTGATATATA 580
> Ahg938143 jgi|Araly1|938143|scaffold_502334.1
Length=886
Score = 99.0 bits (53), Expect = 5e-20
Identities = 86/101 (85%), Gaps = 6/101 (6%)
Strand=Plus/Plus
Query 327 CCGGAGACCGAGTCCATAGAGAATGTGATCAAAGGGATAAAATCATCAGAAA-GACTCAT 385
||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 288 CCGGAGATAGAGTCTATAGAGAATGTGATCAAAGGGATAAAATCATC-GAAAAGACTCAT 346
Query 386 CTTTGAAC-GTAAAGGAGA-ATCAAACTCTATTCTTGAAGA 424
|| |||| | | |||| | ||| |||||||| || |||||
Sbjct 347 ATTCGAACAG-AGAGGA-ACATCGAACTCTATACTCGAAGA 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30688948185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5