BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52560.4
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898177 jgi|Araly1|898177|Al_scaffold_0005_2143 422 3e-117
Ahg482581 jgi|Araly1|482581|fgenesh2_kg.4__1641__AT2G36060.2 265 5e-70
Ahg949141 jgi|Araly1|949141|scaffold_801028.1 228 7e-59
Ahg950019 jgi|Araly1|950019|scaffold_801906.1 213 2e-54
Ahg931770 jgi|Araly1|931770|scaffold_304227.1 213 2e-54
Ahg926423 jgi|Araly1|926423|scaffold_201984.1 213 2e-54
> Ahg898177 jgi|Araly1|898177|Al_scaffold_0005_2143
Length=444
Score = 422 bits (228), Expect = 3e-117
Identities = 254/267 (95%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 370 ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAG 429
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 178 ACTGTTCATGAAGGTAGAATTTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCAGAG 237
Query 430 AAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACA 489
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 AAACCTCCAACTGTCCGATTCCATTCACGTGTTAACATGGCTTGTGTCAACCACGAAACA 297
Query 490 GGAGTGGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACAATG 549
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 298 GGAGTGGTGGATCCTAAGAAATTCGGGGTACTTGCAAACTGGCAAAGAGAGTACACAATG 357
Query 550 GAGGATATACTGGTACAGTTGAAGAAGGAAATGTCTACGTCGCATAACCGTAAGCTTGTT 609
|||||||||||| |||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 358 GAGGATATACTGACACAGCTAAAGAAGGAAATGGCCACGTCGCATAACCGTAAGCTTGTT 417
Query 610 CAACCTCCGGAAGGTACTTGCTTCTAG 636
|||||||| ||||||||||| ||||||
Sbjct 418 CAACCTCCAGAAGGTACTTGTTTCTAG 444
Score = 305 bits (165), Expect = 3e-82
Identities = 171/174 (98%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 142 ATGACTCTTGGCTCAGGAGGATCTAGCGTTGTTGTTCCGAGGAATTTTCGGTTGTTGGAG 201
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 ATGACTCTTGGCTCTGGAGGATCTAGTGTTGTTGTTCCGAGGAATTTCCGGTTGTTGGAG 60
Query 202 GAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGAT 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGAT 120
Query 262 GGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC 174
> Ahg482581 jgi|Araly1|482581|fgenesh2_kg.4__1641__AT2G36060.2
Length=883
Score = 265 bits (143), Expect = 5e-70
Identities = 168/180 (93%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 138 AATTATGACTCTTGGCTCAGGAGGATCTAGCGTTGTTGTTCCGAGGAATTTTC-GGTTGT 196
||| ||||||||||||||||||||||| || ||||| ||||||||||| |||| |||||
Sbjct 148 AATCATGACTCTTGGCTCAGGAGGATCAAGTGTTGTCGTTCCGAGGAA-TTTCAGGTTGC 206
Query 197 TGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGG 256
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 207 TGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGG 266
Query 257 ATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACA 316
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 267 ATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACA 326
> Ahg949141 jgi|Araly1|949141|scaffold_801028.1
Length=365
Score = 228 bits (123), Expect = 7e-59
Identities = 131/135 (97%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 182 GGAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG 241
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 GGAATTTCCGGTTGTTGAAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG 138
Query 242 TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCA 301
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 139 TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCAATCTTGGACTGGCACCATCA 198
Query 302 TCGGTCCTCACAACA 316
|||||||||||||||
Sbjct 199 TCGGTCCTCACAACA 213
> Ahg950019 jgi|Araly1|950019|scaffold_801906.1
Length=226
Score = 213 bits (115), Expect = 2e-54
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 183 GAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGT 242
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 23 GAATTTCCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATAGAACTGT 82
Query 243 GAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCAT 302
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 83 GAGCTATGGAATGGATAATGGAGATGATATCTATATGCGTTCTTGGACTGGCACCACCAT 142
Query 303 CGGTCCTCACAAC 315
||||||||||||
Sbjct 143 TGGTCCTCACAAC 155
> Ahg931770 jgi|Araly1|931770|scaffold_304227.1
Length=227
Score = 213 bits (115), Expect = 2e-54
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 183 GAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGT 242
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 23 GAATTTCCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATAGAACTGT 82
Query 243 GAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCAT 302
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 83 GAGCTATGGAATGGATAATGGAGATGATATCTATATGCGTTCTTGGACTGGCACCACCAT 142
Query 303 CGGTCCTCACAAC 315
||||||||||||
Sbjct 143 TGGTCCTCACAAC 155
> Ahg926423 jgi|Araly1|926423|scaffold_201984.1
Length=227
Score = 213 bits (115), Expect = 2e-54
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 183 GAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGT 242
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 23 GAATTTCCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATAGAACTGT 82
Query 243 GAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCAT 302
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 83 GAGCTATGGAATGGATAATGGAGATGATATCTATATGCGTTCTTGGACTGGCACCACCAT 142
Query 303 CGGTCCTCACAAC 315
||||||||||||
Sbjct 143 TGGTCCTCACAAC 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5