BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52561.1

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485623 jgi|Araly1|485623|fgenesh2_kg.5__1615__AT3G52561.1         645    0.0  


> Ahg485623 jgi|Araly1|485623|fgenesh2_kg.5__1615__AT3G52561.1
Length=466

 Score =  645 bits (349),  Expect = 0.0
 Identities = 430/468 (92%), Gaps = 9/468 (2%)
 Strand=Plus/Plus

Query  34   CCCATCCCCTAGAAAAACACAGAGAAAAACAAATACAAGAATACAAAAACCCTCTCGACG  93
            |||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||| ||
Sbjct  1    CCCATCACCTAGAACAACACAAAGAAAAACAAATACAAAAATACAAAAACCCTCTCGGCG  60

Query  94   AAACCGAAGTATCGAAATGAGAAACAAGAATGGTAAAAGAGGTAGCGTTGAGCCCTCGGC  153
            |||||||||| ||||||||||||||||||| |||||||||| ||| |||||||| ||| |
Sbjct  61   AAACCGAAGTTTCGAAATGAGAAACAAGAACGGTAAAAGAGTTAGAGTTGAGCCATCGAC  120

Query  154  GAGGACCGTGGCGTCGGTGGTTGCTAATGGGAGGTTTGAAGGAAGATCACCATCGAGCGA  213
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAGGACCGTGGCATCGGTGGTTGCTAATGGGAGGTTTGAAGGAAGATCACCATCGAGCGA  180

Query  214  CACATCATCATCACAAAACTCGTGCCTGACGAGGACGGAGGAAGTGAAGGAGGAGGTTGC  273
            ||| | |||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||||
Sbjct  181  CACGTTATCATCGCAAAACTCGTGCCTGTCGACGACGGAGGACGTGAAGGAGGAGATTGC  240

Query  274  ATCGTCGTGGGTTGATGAAGAAGAGGCGCCGGAGATGGTGGTGATGGGATGTCGAAGTTG  333
            ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct  241  ATCGTCGTGGGTTGATGAAGAAGAGGCGCCGGATATGGTGGTGGTGGGATGTCGAAGATG  300

Query  334  TATGATGTATG-TTATGGTCTTACAAGAACGTCAACGTTGCCCCAAGTGCAAATGCACCG  392
            | ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  301  TCTGATGTATGCTT-TGGTCTTACAAGAACGTAAACGTTGCCCCAAGTGCAAATGCACCG  359

Query  393  ACTTGATCTTCTTTTA----GAGAATTTGTTTTAAGTTAT--TATTCAATTTGGACTTTT  446
            ||||||||||||||||    ||||||||||| |||| |||  | || |||||||||||||
Sbjct  360  ACTTGATCTTCTTTTAATTAGAGAATTTGTTCTAAGCTATGGTTTT-AATTTGGACTTTT  418

Query  447  GAGTTTGAGATGATGAATTTAATTTTCTTTGTAAAGTCCTCTATATAA  494
            |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  419  GAGTTTGAGATGATGAATTTTATTTTCTTTGTAAAGTCCTCTATATAA  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18734394199


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5