BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52570.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485626 jgi|Araly1|485626|fgenesh2_kg.5__1618__AT3G52570.1 1727 0.0
> Ahg485626 jgi|Araly1|485626|fgenesh2_kg.5__1618__AT3G52570.1
Length=1214
Score = 1727 bits (935), Expect = 0.0
Identities = 1130/1224 (92%), Gaps = 14/1224 (1%)
Strand=Plus/Plus
Query 3 AGAAGAAGAATCAATGGCGAGAACGAGAATTATAACGAACCGATTTGAATCTCGCTTTTT 62
||| |||||||||||||||||||| | ||| |||||||||||||| ||||||||
Sbjct 1 AGAGGAAGAATCAATGGCGAGAAC------TCTAAAGAACCGATTTGAATATCGCTTTTG 54
Query 63 GATTCGTTTCCTTGAATCTCCGACTCTATTCGCCTCTTGTTTCACGAGTTCCAGATCTCT 122
| ||||||||||| | ||||||| | | |||| |||||||||||||| ||| ||||||||
Sbjct 55 GCTTCGTTTCCTTCAGTCTCCGAGTTTGTTCGTCTCTTGTTTCACGACTTCGAGATCTCT 114
Query 123 TCAAACCCTAGCCTACGAAGAAGTCCGAACCTCCGGTGATCGGG-AGTCTGAATCTACAG 181
||||||||||||||||||||||||||| |||||||| || ||| |||||||||| ||||
Sbjct 115 CCAAACCCTAGCCTACGAAGAAGTCCGATCCTCCGGTAAT-GGGAAGTCTGAATCAACAG 173
Query 182 CTCTCATCCTTCATGGCCTCCTCGGTTCCGGTCGCAACTGGAGATCGTTTTCTCGCTCCC 241
||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 174 CTCTCATCCTTCACGGCCTCCTCGGCTCCGGACGCAACTGGAGATCGTTTTCTCGCTCTC 233
Query 242 TTGCATCATCTCTCTCCGTCTCCTCTGCTTCTGATTGGAAGATGATATTGGTTGATCTGA 301
| ||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 234 TCGCATCGTCTCTCTCTGTCTCCTCTTCTTCTGTTTGGAAGATGATATTGGTTGATCTGA 293
Query 302 GGAACCATGGGAGATCTGCGGAAGTGGAAGGGCTTAATCCGCCTCATGATCTTGTGAATT 361
||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 294 GGAACCATGGGAGATCTTCGGAGGTGGAAGGGCTTAATCCACCTCATGATCTTGTGAATT 353
Query 362 CAGCTAAGGATTTAGCTGATTTGGTTAAAGCAAGTGGCTGGAATTGGCCTGATGTGGTCA 421
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 354 CAGCTAAGGATTTAGCTGATTTGGTTAAAGCAAGTGGTTGGAAATGGCCTGAGGTGGTCA 413
Query 422 TTGGTCACTCTTTGGGAGGTAAAGTGGCGTTGCAGTTCATGGAGAGTTGTGCTCGTGGTG 481
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 414 TTGGTCACTCTTTGGGAGGTAAAGTGGCTTTGCAGTTTATGGAGAGTTGTGCTCGTGGTG 473
Query 482 ATTTTGGTGAAT-CTGCTTCTCCTCCTAAACAGCTATGGGTACTAGACTCTGTCCCTGGG 540
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ATTTTGGTG-ATACAGCTTCTCCTCCTAAACAGCTATGGGTACTAGACTCTGTCCCTGGG 532
Query 541 GAAGTCAAGGCAGAAAAAAGTGATGGTGAAGTAGAGAAAGTTCTGAAGACTTTGCAGAGT 600
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 533 GAAGTCAAGGCAGAAAAAAGTGATGGTGAAGTAGAGAAAGTTCTTCAGACGTTGCAGAGT 592
Query 601 TTACCTTCATCAATCCCTTCTCGCAAGTGGCTTGTTGATCGTATGGTCGAACTTGGGTTT 660
||||||||| |||||||||||||| ||||||| || |||| ||||||||||||||| |||
Sbjct 593 TTACCTTCACCAATCCCTTCTCGCCAGTGGCTCGTGGATCATATGGTCGAACTTGGTTTT 652
Query 661 TCAAGATCATTATCCGAGTGGATTGGCAGCAATCTCAAGAGATCTGGAGACTCAGAGACA 720
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 653 TCAAGATCATTATCTGAGTGGATTGGTAGCAATCTCAAGAGATCTGGAGACTCAGAGATA 712
Query 721 TGGACCTTTAACCTTGACGGAGCTGTCCAAATGTTCAACTCTTACAGAGAGACTTCTTAC 780
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 713 TGGGCCTTTAACCTTGACGGAGCTATCCAAATGTTCAACTCTTACAGAGAGACTTCTTAC 772
Query 781 TGGTCTTTGCTAGAGAACCCGCCAAAAGAGACAGAGATAAATTTTGTGATTGCAGAAAAG 840
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 773 TGGTCTTTGCTAGAGAATCCACCGAAAGAGACAGAGATAAATTTTGTGATTGCAGAAAAG 832
Query 841 AGTGACCGATGGGACAACGATACAACCAAGCGGCTTGAAACAATAGCTAACCAGAGACAG 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 833 AGTGACCGATGGGACAACGATACAACCAAGCGGCTTGAAACAATTGCTAACCAGAGACAG 892
Query 901 AATGTAGCCGAAGGGAAGGTTGCGACTCATCTTCTTCGTAACTCTGGCCATTGGGTACAC 960
||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 AATGTCTCAGAAGGGAAAGTTGCGACTCACCTTCTTCGTAACTCTGGCCATTGGGTACAC 952
Query 961 ACAGACAATCCAAAGGGACTCCTAGAGATTGTGAGTCCCAACTTCTTCTCCCCACACGAG 1020
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 953 ACAGAAAATCCAAAGGGACTCCTAGAGATTGTGAGTCCCAAATTCTTCTCCCCACACGAG 1012
Query 1021 TAGACGATGCGCTACGAAAATGGCATTAGTCTTTGCTTACAATTTCACTCCTGTTCAGTA 1080
|||||||||||||||||||||| |||||||||||| ||| | |||| ||||||| |||||
Sbjct 1013 TAGACGATGCGCTACGAAAATGACATTAGTCTTTGATTATATTTTCTCTCCTGTCCAGTA 1072
Query 1081 TCTATATGCAGAAA-TAGCAAATCCAATCGCAACTATTTTGACGATGCGCGGTTTTTCCC 1139
| |||||||||||| |||||||| |||| |||||| ||||||||||||||||||||| ||
Sbjct 1073 TTTATATGCAGAAAATAGCAAATTCAATTGCAACTGTTTTGACGATGCGCGGTTTTTTCC 1132
Query 1140 GTTTGTG-TTTCCTAATTTTGCATTAGCATATCCTTTCAACAATGTACAAACGTTTAGGA 1198
||||||| ||| || |||||| || |||| || |||| |||||||||||||||||||||
Sbjct 1133 GTTTGTGATTTGTTA-TTTTGCGTTTGCATTTC-TTTCTACAATGTACAAACGTTTAGGA 1190
Query 1199 GGATCTAATAACATCAATAAACTT 1222
||||||||||| |||| |||||||
Sbjct 1191 GGATCTAATAATATCATTAAACTT 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5