BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52580.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938148 jgi|Araly1|938148|scaffold_502339.1 758 0.0
Ahg482591 jgi|Araly1|482591|fgenesh2_kg.4__1651__AT2G36160.1 580 4e-165
Ahg478490 jgi|Araly1|478490|fgenesh2_kg.3__1191__AT3G11510.1 521 2e-147
Ahg937698 jgi|Araly1|937698|scaffold_501889.1 183 1e-45
> Ahg938148 jgi|Araly1|938148|scaffold_502339.1
Length=490
Score = 758 bits (410), Expect = 0.0
Identities = 463/488 (95%), Gaps = 5/488 (1%)
Strand=Plus/Plus
Query 88 CTCTGTTCCAAACCATGTCGAAGAGAAAGACCAAAGAGCCAAAGGTTGAGAATGTGACTC 147
||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||
Sbjct 7 CTCTGTTCCAAACCATGTCGAAGAGAAAGACAAAAGAGCCAAAGGTTGAG-ACAT--CTC 63
Query 148 TTGGACCAGCTGTTCGTGAAGGAGAGCAA-GTCTTTGGAGTTGTTCACGTCTTTGCTTCA 206
|||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 64 TTGGACCAACTGTTCGTGAAGGAGAG-AACGTCTTTGGAGTTGTTCACATCTTTGCTTCA 122
Query 207 TTCAACGACACTTTCATTCACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATC 266
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 TTCAACGACACTTTCATTCACGTGACTGATCTGTCTGGACGGGAAACACTTGTTCGCATC 182
Query 267 ACTGGTGGAATGAAGGTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCTGCTATGCTT 326
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 183 ACTGGTGGAATGAAGGTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCAGCTATGCTT 242
Query 327 GCGGCACAAGATGTTGCTCAGCGATGCAAGGAACTTGGAATCACTGCCATACATGTGAAA 386
|| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 243 GCTGCACAAGATGTCGCTCAGCGATGCAAGGAACTTGGAGTCACTGCGATACATGTGATG 302
Query 387 CTCCGTGCCACTGGTGGTAACAAGACCAAGACCCCTGGACCTGGTGCTCAGTCTGCTCTA 446
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 303 CTCCGTGCCACTGGTGGAAACAAGACAAAGACCCCTGGACCTGGTGCTCAGTCTGCCCTA 362
Query 447 AGAGCCCTTGCCCGTTCTGGCATGAAAATTGGTCGCATTGAGGATGTGACTCCAATCCCA 506
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 AGAGCCCTTGCTCGTTCTGGCATGAAAATTGGCCGCATTGAGGATGTGACTCCAATCCCA 422
Query 507 ACCGACAGTACCCGCAGAAAGGGTGGAAGAAGAGGAAGGAGGCTCTGAGTTATTTGGCCT 566
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 423 ACCGACAGTACCCGCAGAAAGAGTGGAAGAAGAGGAAGGAGGCTGTGAGTTATTTGGCCT 482
Query 567 CTCGTTGG 574
||||||||
Sbjct 483 CTCGTTGG 490
> Ahg482591 jgi|Araly1|482591|fgenesh2_kg.4__1651__AT2G36160.1
Length=678
Score = 580 bits (314), Expect = 4e-165
Identities = 449/513 (88%), Gaps = 14/513 (3%)
Strand=Plus/Plus
Query 104 GTCGAAGAGAAAGACCAAAGAGCCAAAGGTTGA-GAATGTGACTCTTGGACC-AGCTGTT 161
||||||||||||||| |||||||||||||| || | ||||||||||||||| || ||||
Sbjct 73 GTCGAAGAGAAAGACTAAAGAGCCAAAGGTCGATG-TTGTGACTCTTGGACCAAG-TGTT 130
Query 162 CGTGAAGGAGAGCAAGTCTTTGGAGTTGTTCACGTCTTTGCTTCATTCAACGACACTTTC 221
| ||| ||||||||||| ||||| ||||| ||| ||||||| |||||||||||||| |||
Sbjct 131 CTTGAGGGAGAGCAAGTTTTTGGTGTTGTCCACATCTTTGCATCATTCAACGACACATTC 190
Query 222 ATTCACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGAATGAAG 281
||||| || ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 191 ATTCATGTTACTGATTTGTCTGGACGTGAAACACTTGTCCGTATCACTGGTGGAATGAAG 250
Query 282 GTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCTGCTATGCTTGCGGCACAAGATGTT 341
|||||||| || || |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 251 GTGAAAGCTGATAGGGATGAGTCCTCACCTTATGCAGCTATGCTTGCTGCACAGGATGTC 310
Query 342 GCTCAGCGATGCAAGGAACTTGGAATCACTGCCATACATGTGAAACTCCGTGCCACTGGT 401
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 311 GCTCAGCGATGCAAGGAACTTGGAATCACTGCCATGCATGTGAAGCTCCGTGCCACCGGT 370
Query 402 GGTAACAAGACCAAGACCCCTGGACCTGGTGCTCAGTCTGCTCTAAGAGCCCTTGCCCGT 461
|| ||||||||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||
Sbjct 371 GGAAACAAGACCAAAACACCTGGTCCTGGAGCTCAGTCTGCTCTTAGAGCTCTTGCTCGT 430
Query 462 TCTGGCATGAAAATTGGTCGCATTGAGGATGTGACTCCAATCCCAACCGACAGTACCCGC 521
|||||||||||||| || || ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 431 TCTGGCATGAAAATAGGACGTATTGAGGATGTTACTCCCATCCCAACAGACAGTACCCGC 490
Query 522 AGAAAGGGTGGAAGAAGAGGAAGGAGGCTCTGAGTTATTTGGCCTCTCGTTGGATCTC-C 580
|||||||||| ||||||||||| |||||||||||| || |||| | |||||| | |
Sbjct 491 CGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTT-TTCCGCCT-TA-TTGGATATGTC 547
Query 581 TT--ATGTAGCTTTCTCAA-TGTTTCATTTTGT 610
|| || ||||| | || |||||||||||||
Sbjct 548 TTTTATTTAGCT--C-CATGTGTTTCATTTTGT 577
> Ahg478490 jgi|Araly1|478490|fgenesh2_kg.3__1191__AT3G11510.1
Length=656
Score = 521 bits (282), Expect = 2e-147
Identities = 401/458 (88%), Gaps = 10/458 (2%)
Strand=Plus/Plus
Query 102 ATGTCGAAGAGAAAGACCAAAGAGCCAAAGGTTGAGAATGTGACTCTTGGACC-AGCTGT 160
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 67 ATGTCGAAGAGAAAGACTAAAGAGCCAAAGGTTGAGAATGTGACTCTTGGACCTA-CTGT 125
Query 161 TCGTGAAGGAGAGCAAGTCTTT-GGAGTTGTTCACGTCTTTGCTTCATTCAACGACACTT 219
|||||||||||||||||| ||| || ||||||||| |||||||||| ||||| || ||||
Sbjct 126 TCGTGAAGGAGAGCAAGT-TTTCGGTGTTGTTCACATCTTTGCTTCTTTCAATGATACTT 184
Query 220 TCATTCACGTGACTGATTTGTCTGGACGG-GAAACACTTGTTCGCATCACTGGTGGAATG 278
||||||||||||||||| ||||||| | | ||||| || ||||| ||||| ||||| |||
Sbjct 185 TCATTCACGTGACTGATCTGTCTGG-CAGAGAAACTCTCGTTCGTATCACCGGTGGCATG 243
Query 279 AAGGTGAAAGCCGA-CAGAGATGAGTCCTCACCTTATGCTGCTATGCTTGCGGCACAAGA 337
|||||||| || || | | ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 244 AAGGTGAAGGCTGATC-GTGATGAGTCCTCTCCTTATGCTGCTATGCTTGCAGCACAAGA 302
Query 338 TGTTGCTCAGCGATGCAAGGAACTTGGAATCACTGCCATACATGTGAAACTCCGTGCCAC 397
||||||||| |||||||||| ||||| ||||| ||||| || ||||| |||||||| ||
Sbjct 303 TGTTGCTCAAAGATGCAAGGAGCTTGGCATCACAGCCATTCACGTGAAGCTCCGTGCTAC 362
Query 398 TGGTGGTAACAAGACCAAGACCCCTGGACCTGGTGCTCAGTCTGCTCTAAGAGCCCTTGC 457
||| || ||||| |||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 363 TGGAGGAAACAAAACCAAGACTCCAGGTCCTGGTGCTCAGTCTGCTCTCAGAGCCCTTGC 422
Query 458 CCGTTCTGGCATGAAAATTGGTCGCATTGAGGATGTGACTCCAAT-CCCAACCGACAGTA 516
|||||||||||||| |||||||| || ||||||||||| || || |||| | |||||||
Sbjct 423 TCGTTCTGGCATGAAGATTGGTCGTATAGAGGATGTGACCCCGATTCCCA-CAGACAGTA 481
Query 517 CCCGCAGAAAGGGTGGAAGAAGAGGAAGGAGGCTCTGA 554
| ||| ||||||||||| |||||||||| || || |||
Sbjct 482 CACGCCGAAAGGGTGGACGAAGAGGAAGAAGACTGTGA 519
> Ahg937698 jgi|Araly1|937698|scaffold_501889.1
Length=376
Score = 183 bits (99), Expect = 1e-45
Identities = 199/242 (82%), Gaps = 28/242 (12%)
Strand=Plus/Plus
Query 486 GAGGATGTGACTCCAATCCCAACCGACAGTACCCGCAGAAAGGGTGGAAGAAGAGGAAGG 545
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 153 GAGGATGTGACTCCAATCCCAACCGACAG-ACCCGCAGAAAGGGTGGCAGAAGAGGA-G- 209
Query 546 AGGCTCTGAGTTATTTGGCCTCTCGTTGGATC-TCCTTATGTAGCT-T--TCTCAATGTT 601
|| | | || |||||| || | | ||||| || ||||| ||| | ||||||||||
Sbjct 210 AGTTTTT---TT-TTTGGCGTCGC-T-GGATCCTC-TTATGG-GCTCTACTCTCAATGTT 261
Query 602 TCATT-TTGTTTTTTCTTAGTTTGAAAAGAGTTTTGGAATT-ACTATGCTTTGTTATAGT 659
|||| ||||| |||||| || || |||||||| |||| |||||||||| |||||||
Sbjct 262 TCATAATTGTTCTTTCTTTCTT--AA--GAGTTTTG-AATTTACTATGCTTTATTATAGT 316
Query 660 CTCAACTCTGAACAGCTTTGGATCTTTT-TCTGTATGACCATAAGATATTCAAAAATTGG 718
||||||||||||||||||||||||| | | | |||| | |||||||||||||| ||||
Sbjct 317 ATCAACTCTGAACAGCTTTGGATCTTCTGT-TATATG-C--TAAGATATTCAAAA-TTGG 371
Query 719 TA 720
||
Sbjct 372 TA 373
Score = 159 bits (86), Expect = 2e-38
Identities = 121/137 (88%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 225 CACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGAATGAAGGTG 284
||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 18 CACATGACTGATTTGTCTGGACGGGAAACCCGTGTTCGCATCACTGGTGGAATGAAGGTG 77
Query 285 AAAGCCGACAGAGATGAG--TCCT-CACCTTAT--GCTGCTATGCTTGCGGCACAAGATG 339
|||||||||||||||||| || | |||| ||| || | ||||||||| |||||| |||
Sbjct 78 AAAGCCGACAGAGATGAGAGTC-TGCACCGTATTTGCAGATATGCTTGCTGCACAAAATG 136
Query 340 TTGCTCAGCGATGCAAG 356
| ||| |||||||||||
Sbjct 137 TCGCTTAGCGATGCAAG 153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5