BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52600.1
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898182 jgi|Araly1|898182|Al_scaffold_0005_2148 2798 0.0
Ahg934243 jgi|Araly1|934243|scaffold_402231.1 1040 0.0
> Ahg898182 jgi|Araly1|898182|Al_scaffold_0005_2148
Length=1773
Score = 2798 bits (1515), Expect = 0.0
Identities = 1691/1777 (95%), Gaps = 8/1777 (0%)
Strand=Plus/Plus
Query 87 ATGAGTGCTCCAAAGTTTGGTTATGTATTACTATTGATTGTATTAATCAATATTAGCAAT 146
||||||||| ||||| ||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAGTGCTTCAAAGCTTGTTTCTGTATTACTATTGATTGTATTAATCAATATAAGCAAT 60
Query 147 AATGGCGTCGATGCATTTCACAAAGTTTTCAAGAAATTGCAATCAAAATCGACATCATTG 206
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 AATGGCGTCGATGCATTTCACAAAATTTTCAAGAAATTGCAATCACAATCGACATCATTG 120
Query 207 GAGTCAGTAAGTCCTCTTCACAGAACCGCTTATCACTTTCAACCTCCCCGCCATTGGATC 266
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GATTCAGTGAGTCCTCTTCACAGAACCGCATATCACTTTCAACCTCCCCGCCATTGGATC 180
Query 267 AACGATCCGAATGCTCCAATGCTCTACAAGGGAGTTTACCATCTCTTCTACCAATACAAT 326
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 181 AACGATCCGAATGCTCCAATGCTCTACAAGGGAATCTACCATCTCTTCTACCAATACAAT 240
Query 327 CCCAAAGGTGCGGTTTGGGGTAACATTGTGTGGGCTCACTCGGTTTCTAAGGACTTGATC 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCCAAAGGTGCGGTTTGGGGTAACATTGTGTGGGCTCACTCGGTTTCTAAGGACTTGATC 300
Query 387 AATTGGGAAGCCCTTGAACCAGCCATTTACCCATCCAAATGGTTCGACATCAACGGTACA 446
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTGGGAAGCCCTTGAACCAGCTATTTACCCATCCAAATGGTTCGACATCAACGGTACA 360
Query 447 TGGTCCGGTTCAGCTACCCACGTACCGGGAAAAGGACCGGTTATCCTCTACACCGGTATC 506
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 361 TGGTCCGGTTCATCTACCCACGTACCGGGCAAAGGACCGGTCATCCTCTACACCGGTATC 420
Query 507 ACCGAGAACCAGACTCAGATTCAAAACTACGCCATTCCACAAGATCTTTCCGACCCATAC 566
||||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||||
Sbjct 421 ACCGAGAACCAGACTCAAATTCAAAACTATGCAATTCCACAAGACCTTTCCGATCCATAC 480
Query 567 CTCAAGACATGGA-TAAAGCCAGACGATAACCCCATCGTAAAACCCGATAATGGCGAGAA 625
||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 481 CTCAAGACATGGATTAAA-CCAGACGATAACCCAATCGTAAAACCCGATCATGGCGAGAA 539
Query 626 CGGATCCGCTTTCCGTGACCCGACCACGGCTTGGTTCAACAAAAAAGATGGGTATTGGAG 685
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGGATCCGCTTTCCGTGACCCAACCACGGCTTGGTTCAACAAAAAAGATGGGTATTGGAG 599
Query 686 AATGCTTGTTGGCTCAAAGAGAAAGAACAGAGGAATTGCTTATATGTACAAGAGCCGTGA 745
|||||||||||||||||||| |||| |||||||||| |||||||||||||| || |||||
Sbjct 600 AATGCTTGTTGGCTCAAAGAAAAAGCACAGAGGAATCGCTTATATGTACAAAAGTCGTGA 659
Query 746 CTTCAAAAAATGGGTCAAAAGCAAACGTCCTATCCACTCAAGAAAGAAAACCGGTATGTG 805
|||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 660 CTTCAAGAAATGGGTCAAAACCAAACGTCCTATCCACTCCAGAAAGAAGACCGGTATGTG 719
Query 806 GGAATGTCCCGATTTCTTCCCGGTATCCGTAACCGACAAGAAAAACGGTTTGGACTTCAG 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGAATGTCCCGATTTCTTCCCGGTATCCGTAACCGACAAGAAAAACGGTTTGGACTTCAG 779
Query 866 CTACGACGGTCCAAACGCCAAGCATGTGTTGAAGGTTAGTTTGGACTTGACCAGATACGA 925
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 CTACGACGGTCCAAACGCCAAGCATGTGTTGAAGGTTAGTTTGGACTTGACCCGATACGA 839
Query 926 GTACTACACTCTTGGAACGTATGACACCAAGAAGGATCGTTACAGGCCAGACGGTTACAC 985
|||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 840 GTACTATACTCTTGGAAAGTATGACACCAAGAAGGATCGATACAGACCAGACGGTAACAC 899
Query 986 TCCTGACGGTTGGGATGGTTTGAGATTTGATTATGGTAACTACTATGCGTCAAAGACATT 1045
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 TCCTGACGGTTGGGATGGTTTGAGATTTGATTATGGTAACTTCTATGCGTCAAAGACATT 959
Query 1046 CTTTGATGACAAGACGAACAGAAGAATTCTTTGGGGGTGGGCCAATGAATCCGACACCGT 1105
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 CTTTGATGACAAGAAGAAGAGAAGAATTCTTTGGGGTTGGGCCAATGAATCCGACACCGT 1019
Query 1106 TCAAGATGATACCG-TGAAGGGTTGGGCCGGAATTCAGCTTATCCCAAGAACAATCTTGC 1164
| ||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1020 TGAAGATGATA-CGTTGAAGGGTTGGGCCGGAGTTCAGCTTATCCCACGAACAATCTTGC 1078
Query 1165 TTGACTCTAGCGGTAAGCAACTCGTGTTTTGGCCTATTGAAGAGATTGAGTCATTGAGAG 1224
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGACTATAGCGGTAAGCAACTCGTGTTTTGGCCTATTGAAGAGATTGAGTCATTGAGAG 1138
Query 1225 GAAAGAATGTCCAAATGACCAACCAGAAAATGGAGATGGGCCAACGCTTTGAGGTCCAAG 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAAAGAATGTCCAAATGACCAACCAGAAAATGGAGATGGGCCAACGCTTTGAGGTCCAAG 1198
Query 1285 GAATCACTCCTGCTCAGGTGGATGTGGATGTGACATTCAACGTTGGAAATCTAGAGAAGG 1344
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1199 GAATCACTCCTGCTCAGGTGGATGTGGATGTGACATTCAACGTTGGAAGTCTAGAGAAAG 1258
Query 1345 CCGAAAAGTTTGACGAAAGCTTCGCAACTAAACCACTAGAGTTATGTAACTTGAAAGGTT 1404
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCGAAAAGTTCGACGCAAGCTTCACAACTAAACCACTAGAGTTATGTAACTTGAAAGGTT 1318
Query 1405 CGAATGTGAATGGTGGAGTTGGTCCTTTTGGTTTGATCACGTTGGCTACATCTGACTTAG 1464
| ||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 1319 CAAATGTGACTGGCGGAGTCGGTCCTTTTGGTCTGATCACGTTGGCTACATCTGACCTAG 1378
Query 1465 AAGAATACACTCCTGTTTTCTTTAGAGTCTTCAAAGATGCCGCATCCAACAAGCCTAAGG 1524
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 1379 AAGAATACACTCCTGTTTTCTTCAGAGTCTTCAAAGATGCCTCAACCAACAAGCCTAAGG 1438
Query 1525 TTCTCATGTGCTCTGACGCCAAGCCTTCGAGTCTCAAAAAAGACACCGGGACTGACGCCA 1584
| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
Sbjct 1439 TCCTCATGTGCTCTGACGCCAAGCCTTCGAGTCTCAAAACAGACACAGGCTCTGACGCAA 1498
Query 1585 AGGAGAGGATGTACAAACCATCGTTTGCTGGTTTTGTGGATGTCGGTCTC-CTTGACGGA 1643
|| |||||||||||||||| ||||||||||||||||| ||||| | |||| || ||||||
Sbjct 1499 AGCAGAGGATGTACAAACCCTCGTTTGCTGGTTTTGTTGATGTTGATCTCGCT-GACGGA 1557
Query 1644 AAGATCTCTCTAAGGAGTTTGATTGATCACTCGGTTGTGGAGAGCTTTGGAGCAAAAGGA 1703
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1558 AAGATCTCTCTAAGGAGTTTGATTGATCACTCGGTGGTGGAGAGCTTTGGTGCAAAAGGA 1617
Query 1704 AAGACAGTGATAACATCTAGAGTGTATCCGACAAAAGCAGTAGGAGAAAAAGCTCATTTG 1763
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAGACAGTGATAACATCTAGAGTATATCCGACAAAAGCAGTAGGAGAAAAAGCTCATTTG 1677
Query 1764 TTTGTCTTTAACAACGGCTCACAACCTGTGACCGTAGAGAGCCTCAATGCATGGAACATG 1823
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1678 TTTGTCTTTAACAACGGATCACAGCCTGTGACCGTAGAGAGCCTCAATGCATGGAACATG 1737
Query 1824 CAGAAGCCTCTGAAGATGAACCAAGGTGC-AAAGTGA 1859
|||||||||||||||||||||||||| || ||| |||
Sbjct 1738 CAGAAGCCTCTGAAGATGAACCAAGGAGCTAAA-TGA 1773
> Ahg934243 jgi|Araly1|934243|scaffold_402231.1
Length=1817
Score = 1040 bits (563), Expect = 0.0
Identities = 1347/1713 (79%), Gaps = 103/1713 (6%)
Strand=Plus/Plus
Query 158 TGCATTTCA-CAAAGTTTTC-AAGAAATTGCAATCAAAATCGACATCATTGGAGTCAGT- 214
||||||||| || | ||| | ||| |||||||||| | || |||| | ||||||||
Sbjct 104 TGCATTTCATCAGA-TTTACGAAG-AATTGCAATC----T-GA-ATCAGTCGAGTCAGTG 155
Query 215 AAGTCCTCTTCACAGAACC--GCTTAT-CACTTTCAACCTCC-CCGCCATTGGATCAACG 270
|| || ||||||||| ||| | || | |||||||||||||| | |||||||| ||||
Sbjct 156 AA-TCATCTTCACAG-ACCTAG-TT-TCCACTTTCAACCTCCAAAG-CATTGGATTAACG 210
Query 271 ATCCGAATGCTCCAATGCT-CTACAAGGGAGTTTACCATCTCTTCTACCAATACAATCCC 329
|||| |||| |||| | | |||||| || | |||||||||||||||||||| ||| ||
Sbjct 211 ATCCAAATGGTCCAGT-ATACTACAAAGGTCTCTACCATCTCTTCTACCAATATAATACC 269
Query 330 AAAGGTGCGGTTTGGGGTAACATTGTGTGGGCTCACTCGGTTTCTAAGGACTTGATCAAT 389
|| ||||||||||||||||| ||| | ||||| || ||||||||||| |||||| | ||
Sbjct 270 AAGGGTGCGGTTTGGGGTAATATTATATGGGCCCATTCGGTTTCTAAAGACTTGGTTAAC 329
Query 390 TGGGAAGCCCTTGAACCAGCCATTTACCCATCCAAATGGTTCGACATC-AACGGTACATG 448
||||| || |||||||| ||||| | || || ||||||||||| ||| | ||||||||
Sbjct 330 TGGGAGGCTCTTGAACCGGCCATCCATCCTTCAAAATGGTTCGATATCGGA-GGTACATG 388
Query 449 GTCCGGTTCAGCTACCCA-CGTACCGGGAAAAGGACCGGTTATCCTCTACACCGGT-ATC 506
||| |||||| || | | ||||||||||||||||||| |||||||||| |||||| |
Sbjct 389 GTCAGGTTCA-ATAACAATCGTACCGGGAAAAGGACCGATTATCCTCTATACCGGTGTTA 447
Query 507 ACCGAGAACCAGACTCAGATT-CAAAACTACGCCATTCCACAAGATCTTTCCGACCCATA 565
| | |||| | |||||| || |||||||| || || || | || | || ||||| ||
Sbjct 448 ATC-AGAATGAAACTCAG-TTGCAAAACTATGCAATCCCGGAGGACCCATCAGACCCTTA 505
Query 566 CCTCAA-GACATGGA-TAAAGCCAGACGATAACCCCATCGTAAAACCCGA-TAATGGCGA 622
||| || || ||||| |||| || ||||||||||| || | || || || | || | |
Sbjct 506 CCT-AAGGAAATGGATTAAA-CCGGACGATAACCCGATTGCAATGCCAGACT-AT-ACCA 561
Query 623 -GAACGGATCCGC-TTTCCGTGACCCGACCACGGCTTGGTTCAACAAAAAAGATGGGTAT 680
|||||| || || ||| |||||||||||||||||||||||| | ||||| ||| ||
Sbjct 562 TGAACGGTTCAGCATTT-CGTGACCCGACCACGGCTTGGTTC-TC--CAAAGACGGGCAT 617
Query 681 TGGAGAATGC-TTGTTGGCTCAAAGAGAAAGAACAGAGGAATTGCTTATATGTACAAG-A 738
||||||| | |||| || ||||| |||||| |||||||| ||||| || ||| || |
Sbjct 618 TGGAGAA-CCGTTGTGGGATCAAAAAGAAAGCGTAGAGGAATAGCTTACATCTAC-AGAA 675
Query 739 GCCGTGACTTCAAAAAATGGGTCAAAAGC-AAACGTCCTATCCACTC-AAGAAAGAAAAC 796
|||| || ||||| | |||||| ||||| || | || | ||||| || | || |||
Sbjct 676 GCCGAGATTTCAAGCATTGGGTC-AAAGCTAAGCACCCGGTTCACTCTAA-AGAGTCAAC 733
Query 797 CGGTATGTGGGAATGTCCCGATTTCTTCCCGGTATCCGTAACCGACAAGAAAAACGGTTT 856
|||||||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||
Sbjct 734 CGGTATGTGGGAATGTCCTGATTTCTTTCCGGTTTCCTTAACCGATTTCCAAAACGGTTT 793
Query 857 GGACTTCAG-CTACGACGGTCCAAACGCCAAGCATGTGTTGAAGGTTAGTTTGGACTTGA 915
|||||| | |||| |||||||||| |||||||||||||||||||||| |||||| | |
Sbjct 794 GGACTT-GGATTACGTCGGTCCAAACACCAAGCATGTGTTGAAGGTTAGCTTGGACATAA 852
Query 916 C-CAGATACGAGTACTACACTCTTGG-AACGTATGACACC-AAGAAGGATCGTTACAGGC 972
| | | || ||||| ||||| ||||| || || || || |||||||| || |||| |
Sbjct 853 CTC-GGTATGAGTATTACACGCTTGGTAA-ATACGA-TCCTAAGAAGGACCGGTACATAC 909
Query 973 CAGACGGTTACACTCCTGACGGTTGGGATGGTTTGAGATTTGATTATGGTAACTACTATG 1032
| |||||| | ||||| || |||||||| ||||| || || ||||| ||||| | ||| |
Sbjct 910 CGGACGGTAATACTCCCGATGGTTGGGAGGGTTTAAGGTTCGATTACGGTAATTTCTACG 969
Query 1033 CGTCAAAGACATTCTTTGA-TGACAAGACGAACAGAAGAATTCTT-TGGGGGTGGGCCAA 1090
| || |||||||||||||| | |||| | ||||||||||| |||| ||||| ||||||||
Sbjct 970 CTTCCAAGACATTCTTTGACT-ACAAAAAGAACAGAAGAA-TCTTATGGGGTTGGGCCAA 1027
Query 1091 TGAATCCGACACCGTTCAAGATGATACCGTGAAGGGTTGGGCCGGAATTCAGCTTATCCC 1150
|||||| ||||||||| ||||||||| ||||||||||||| || |||||| | || ||
Sbjct 1028 TGAATCTGACACCGTTGAAGATGATATTTTGAAGGGTTGGGCTGGTATTCAGGTAATTCC 1087
Query 1151 AAGAACAAT-CTTGCTTGACTCTAGC-GGTAAGCAACTCGTGTTTTGGCCTATTGAAGAG 1208
|||||| | ||| ||||| || ||| | |||||||| ||||||||||| | ||||||
Sbjct 1088 AAGAACGGTACTT-CTTGATTCAAGCAAG-AAGCAACTAATGTTTTGGCCTGTCGAAGAG 1145
Query 1209 ATTGAGTCATTGAGAGGAAAGAATGTCCAAATGACCAACCA-GAAAATGGAGATGGGCCA 1267
|| |||||||| ||||| || |||||| ||||| |||||| | | || ||||||| ||
Sbjct 1146 ATAGAGTCATTAAGAGGTAACTATGTCCGAATGAACAACCATG-ACATCAAGATGGGTCA 1204
Query 1268 ACGCTTTGAGGTCCAAGGAATCACTCCTGCTCAGGTGGATGTGGATGTGACATTCAACGT 1327
|||| | || ||| ||||||||||||| ||||| | |||||||| || || ||| | ||
Sbjct 1205 ACGCATAGAAGTCAAAGGAATCACTCCAGCTCAAGCCGATGTGGAAGTAACGTTCTATGT 1264
Query 1328 TGGAAATCTAGAGAAGGCCGA-AAAGTTTGACGAAAGCTTCGCAA-CT-AAACCACTAGA 1384
||||| ||||||||| || || | | |||||| || || ||| | |||||| | ||
Sbjct 1265 TGGAAGTCTAGAGAAAGCTGAGACA-TTTGACCCGAG-TT-TCAAGTTCAAACCATTGGA 1321
Query 1385 GTTATGTAA-CTTGAAAGGTTCGAATGTGA-ATGGTGGAGTTGGTCCTTTTGGTTTGATC 1442
|| ||||| || ||||| |||||||||| | || || || || |||||||||||||||
Sbjct 1322 TTTGTGTAAGATT-AAAGGCTCGAATGTGAGA-GGCGGTGTAGGACCTTTTGGTTTGATC 1379
Query 1443 ACGTTGGCTACAT-CTGACTTAGAAGAATACACTCCTGTTTTCTTTAGAGTCTTCAAAGA 1501
|| || || || | |||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1380 ACATTAGCGAC-TCCTGATTTGGAAGAGTACACTCCTGTCTTCTTTAGAGTCTTCAAAGA 1438
Query 1502 TGCCGCATC-CAACAAGCCTAAGGTTCTCATGTGCTCTGACGCCAAG-CCTTCGAGTC-T 1558
| | | | | |||||||| ||||||||||| || || | | || || || ||| |
Sbjct 1439 CACTAAAACTC-ATAAGCCTAAAGTTCTCATGTGTTCCGATG-CTAGACCGTC--GTCGT 1494
Query 1559 CAAA-AAAGACACCGGG---ACTGACGCCAAGGAGAGGATGTACAAACCATCGTTTGCTG 1614
||| |||||| ||| ||| ||| || || |||||||| ||||||||||||||||
Sbjct 1495 TAAAGCAAGACA-AGGGTCCACT--CGCAAAAGATAGGATGTATAAACCATCGTTTGCTG 1551
Query 1615 GTTTTGTGGATGTCGGTCTC-CTTGACGGAAAGATCTCTCTAAGGAGTTTGATTGATCAC 1673
||||||||||||| | | | || || |||| |||||||||||||||||||||||||||
Sbjct 1552 GTTTTGTGGATGTTGATATGGCT-GATGGAAGGATCTCTCTAAGGAGTTTGATTGATCAT 1610
Query 1674 TCGGTTGTGGAGAGCTTTGGAGCAAAAGG-AAAGACAGTGATAACATCTAGAGTGTATCC 1732
||||| || ||||||||||||||| ||| ||| || ||||||||||| |||||||||||
Sbjct 1611 TCGGTCGTAGAGAGCTTTGGAGCATTAGGGAAA-ACGGTGATAACATCAAGAGTGTATCC 1669
Query 1733 -GACAAAAGCAGTAGGAGAAAAAGCTCATTTGTTTGTCTTTAACAACGGCTCACA-ACCT 1790
| ||| |||||| ||| || || ||||||| ||| |||||||| || |||| || |
Sbjct 1670 AGTGAAA-GCAGTAAAAGATAATGCACATTTGTATGTGTTTAACAATGGAACACAGAC-T 1727
Query 1791 GTGACCGTAGAGAGCCTCAATGCATGGAACATG 1823
|||||| ||||||| |||||||| |||||||||
Sbjct 1728 GTGACCATAGAGAGTCTCAATGCTTGGAACATG 1760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77018475390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5