BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52610.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938151 jgi|Araly1|938151|scaffold_502342.1 2200 0.0
> Ahg938151 jgi|Araly1|938151|scaffold_502342.1
Length=1454
Score = 2200 bits (1191), Expect = 0.0
Identities = 1369/1453 (94%), Gaps = 19/1453 (1%)
Strand=Plus/Plus
Query 65 ATAATGAGTGAGCCAAATCGGGTACCCAAATCCATGACCCGACCCGTCGGAGGAACCGAG 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 ATAATGAGTGAGCCGAATCGGGTACCCAAATCCATGACCCGACCCGTCGGAGGAACCGAG 78
Query 125 TACAGCTGGTGCAGAGCGATTGACGGCGGCACAGGTATCGCCGTCATAGCTCTCTTACTT 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 TACAGCTGGTGCAGAGCCATTGACGGCGGCACAGGTATCGCCGTCATAGCTCTCTTACTT 138
Query 185 TCCCGAACACCAAAACTCCAAAATCTCCAAAATACCCTCGACAAACTCCAGATTTACCAC 244
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 139 TCCCGAACACCAAAACTCCAAAATCTCCAAAACACCCTCGACAAACTCCAGATTTACCAT 198
Query 245 CCCACTCTCCGTTCCAACATCCGTTTCGACGCATCCGCTAACTCCTTCTCCTTCGTCGTT 304
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 199 CCCACCCTCCGTTCCAACATCCGTTTCGACGCATCCGCTAACGCCTTCTCCTTCGTCGTA 258
Query 305 ACGTCCGCCGCCGATTCTCACGTCGAAATCCATCCCTTCGATTCCGTATCTACGGCTCAG 364
||||||||||||||||| | |||||||||||| || |||||||||| |||||||||| ||
Sbjct 259 ACGTCCGCCGCCGATTCCCGCGTCGAAATCCAGCCTTTCGATTCCGAATCTACGGCTGAG 318
Query 365 ATCATCCGAGACAGCGACGATCCATGCGCTGATCCACACAGAATCATCCTAGAACACGAG 424
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 319 ATTATCCGAGACAGCGACGATCCTTGCGCTGATCCACACAGGATCATCCTAGAACACGAG 378
Query 425 ATGAACAAAAACACGTGGATCAATCCACACCGTTGGATCAAATCCGAGTCACGCGTGTTT 484
| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 379 CTTAACAAAAACACGTGGATCAATCCACACCGTTGGATTAACTCCGAGTCACGCGTCTTC 438
Query 485 ATCGTCAGTCTCTACGATCTAACCGACGACGGAGAGCAACGGATACTCACATTTCGGCTG 544
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 439 ATCGTCAGTCTCTACGATCTAACCGACGACGGAGAGCAACGGATACTTACATTTCGGCTG 498
Query 545 AACACGGCGGCGGTCGATCGTACTGCGGCGGTTACGCTTCTGAGAGAGTTTATGAAAGAG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AACACGGCGGCGGTCGATCGTACTGCGGCGGTTACGCTTCTGAGAGAGTTTATGAAAGAG 558
Query 605 ACGGCGGCTGATGGTTTCGGAAACGGTCCCGTGGTGGCGGCGACGGAGACGGCGGTGGGA 664
|||||||||||||| | || |||||||||| || ||| | | |||| ||||
Sbjct 559 ACGGCGGCTGATGGCTGCGAAAACGGTCCC---GT------GAC-G-G-CGGC---GGGA 603
Query 665 TTAGGTAAGGCGATAGAGGAGCTGATTCCGAGTGGGAAAGGGGATAAACCGTTCTGGGCG 724
|| ||| | |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 604 TTGGGTTACCCGATAGAGGAGCTGATTCCGAGTGGGAAAGGGAACAAACCGTTCTGGGCG 663
Query 725 CGTGGCATCGACGTGCTTGGTTACTCGTTAAACGCGTTTCGGTTTTCGAATTTGAATTTC 784
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 664 CGTGGGATCGACGTGCTTGGTTACTCGTTGAACGCGTTTCGGTTTACGAATTTGAATTTC 723
Query 785 GTGGACGCAGAGAATTCGAACCGGAGATCGCAATTGGTGAGGCTCAAATTGGATAGAGAT 844
|||||||||||||||||||| |||||||||||| |||||||| | |||||||| ||||||
Sbjct 724 GTGGACGCAGAGAATTCGAATCGGAGATCGCAAGTGGTGAGGTTGAAATTGGAAAGAGAT 783
Query 845 CAGACTCTCAAACTTGTGGCTGGATGCAAGGCAAGAGGGTTAAAGTTATGGGCGGCATTA 904
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 784 CAGACTCTCAAACTTGTGGCTGGATGCAAGGCAAGAGGTTTAAAGCTATGGGCGGCATTA 843
Query 905 GC-GTCCTCGGCGTTAATCGCTGCGTATTCCTCGAAGAATCTACCGCCATACCAAGGAGA 963
|| | | |||| | ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 844 GCAG-CGTCGGGGCTAATCGCTGCGTATTCCTCGAAGAATCCAACGCCATACCAAGGAGA 902
Query 964 GAAATACGCCGTGGTGACTCTTTCGGATTGTCGTTCCATTCTTGAACCTCCTCTTACTTC 1023
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAAATATGCCGTGGTGACTCTTTCGGATTGTCGTTCCATTCTTGAACCTCCTCTTACTTC 962
Query 1024 AAATGACTTTGGTTTCTACCATGCAGGGATCCTTCATACACACGATTTAACCGGAGAAGA 1083
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 963 TAATGACTTTGGTTTCTACCACGCAGGGATCCTTCACACACACGATTTAACCGGAGAAGA 1022
Query 1084 AAAGCTCTGGGACCTAGCCAAAAGATGCTACGACTCGTTCACATCCTCCAAGAACTCGAA 1143
|| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 1023 AACGCTCTGGGACCTAGCAAAAAGATGCTACGACTCGTTCACATCCGCAAAGAACTCGAA 1082
Query 1144 CAAGCAGTTCACTGATATGTCAGATCTCAATTTCTTAATGTGCAAGGCCATAGAGAATCC 1203
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CAAGCAGTTCACGGATATGTCAGATCTCAATTTCTTAATGTGCAAGGCCATAGAGAATCC 1142
Query 1204 TAATCTCACGCCTTCCTC-TTCTCTGAGAACCGCTTTCATCTCCATATTTGAAGATCCTG 1262
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1143 TAATCTCACGCCTTCCTCGTCCT-TGAGAACCGCTTTCATCTCCATATTTGAAGATCCTG 1201
Query 1263 TTATCGACGAGTCTCCAGAGCCTGAATTGGCTTCTCTTGGGGTGCAAGATTACATTGGAT 1322
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1202 TTATCGACGAGTCTCCGGAGCCTGAATTGGCTTCTGTTGGGGTGCAAGATTACATCGGAT 1261
Query 1323 GCGCGTCTATCCACGGGGTTGGACCGTCGGTTGCGGTTTTCGATGCGCTTAGGGATGGAA 1382
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1262 GCGCATCTATCCACGGGGTTGGACCGTCCGTTGCGGTTTTCGATGCGCTTAGGGACGGAA 1321
Query 1383 AATTGGACTGTGCGTTTGTGTATCCTTCGCCATTGCATTCAAGAGAGCAGATGGATGGGC 1442
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1322 AATTGGACTGTGCGTTTGTGTATCCTTCGCCGTTGCATTCAAGAGAGCAGATGGATGGGC 1381
Query 1443 TGATTCAACATATGAAAACTATTCTTTTGGAAGGATCTGCTTCTTCCTTTTGATTTGTGT 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGATTCAACATATGAAAACTATTCTTTTGGAAGGATCTGCTTCTTCCTTTTGATTTGTGT 1441
Query 1503 TTTGACAATCAAA 1515
||| |||||||||
Sbjct 1442 TTTAACAATCAAA 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5